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SCNpilot_expt_1000_bf_scaffold_5371_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5371_curated_1
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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125..1414
DNA (1290bp) protein (430aa)
processing proteinase; K01422 [EC:3.4.99.-] rbh
Processing proteinase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q985V3_RHILO
Processing proteinase {ECO:0000313|EMBL:BAB53959.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5371_curated_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1586..1987
DNA (402bp) protein (134aa)
ribosomal-protein-alanine N-acetyltransferase (EC:2.3.1.128); K03790 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine N-acetyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKK3_9RHIZ
Ribosomal-protein-alanine N-acetyltransferase {ECO:0000313|EMBL:EHH03688.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_5371_curated_3
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2170..4881
DNA (2712bp) protein (904aa)
diguanylate cyclase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003742A89
Diguanylate cyclase {ECO:0000313|EMBL:ESW94062.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_5371_curated_4
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5062..5373)
DNA (312bp) protein (104aa)
UPI0003CE337A related cluster n=1 Tax=unknown RepID=UPI0003CE337A
UPF0301 protein X753_10705 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5371_curated_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5820..6602
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I003_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53690.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
protein involved in C-type cytochrome biogenesis
SCNpilot_expt_1000_bf_scaffold_5371_curated_6
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6686..7168
DNA (483bp) protein (161aa)
Redoxin domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YBW5_MESOW
Redoxin domain-containing protein
Redoxin domain protein {ECO:0000313|EMBL:AEH90007.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_5371_curated_7
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7172..7687)
DNA (516bp) protein (172aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ribonuclease H (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
UPI0003CEE7CF related cluster n=1 Tax=unknown RepID=UPI0003CEE7CF
SCNpilot_expt_1000_bf_scaffold_5371_curated_8
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7684..8661)
DNA (978bp) protein (326aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
homoserine kinase; K02204 homoserine kinase type II [EC:2.7.1.39]
Homoserine kinase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YVB9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5371_curated_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8669..9682)
DNA (1014bp) protein (338aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZZ9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5371_curated_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9731..10495)
DNA (765bp) protein (255aa)
UPI0003CE0DFC related cluster n=1 Tax=unknown RepID=UPI0003CE0DFC
Uncharacterized protein {ECO:0000313|EMBL:CDX46054.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SURF-1 protein rbh
SCNpilot_expt_1000_bf_scaffold_5371_curated_11
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10492..10770)
DNA (279bp) protein (93aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003827BB6
Membrane protein {ECO:0000313|EMBL:ESZ19399.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5371_curated_12
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10965..11408)
DNA (444bp) protein (148aa)
Cytochrome c oxidase subunit III n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCH6_9RHIZ
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:EKF19871.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
cytochrome c oxidase subunit 3
SCNpilot_expt_1000_bf_scaffold_5371_curated_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11832..12449)
DNA (618bp) protein (206aa)
Cytochrome c oxidase assembly protein CtaG n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZZ2_9RHIZ
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
cytochrome C oxidase assembly protein CtaG/Cox11; K02258 cytochrome c oxidase assembly protein subunit 11
SCNpilot_expt_1000_bf_scaffold_5371_curated_14
unknown

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comp(12457..12624)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5371_curated_15
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12624..12923)
DNA (300bp) protein (100aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
UPI0003CE99B1 related cluster n=1 Tax=unknown RepID=UPI0003CE99B1
SCNpilot_expt_1000_bf_scaffold_5371_curated_16
unknown

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13118..13621
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5371_curated_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13591..14436)
DNA (846bp) protein (282aa)
cytochrome c oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit I n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MGP4_9RHIZ
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EKF19875.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Displaying 17 items

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