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SCNpilot_expt_1000_bf_scaffold_2920_curated

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2920_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..266)
DNA (264bp) protein (88aa)
ankyrin n=1 Tax=Rhizobium meliloti RepID=UPI000368BDAA
Uncharacterized protein {ECO:0000313|EMBL:CDX62655.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ankyrin; K06867
SCNpilot_expt_1000_bf_scaffold_2920_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1693..2235
DNA (543bp) protein (181aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Histidine kinase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B138_PARDP
histidine kinase
SCNpilot_expt_1000_bf_scaffold_2920_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2232..2840
DNA (609bp) protein (203aa)
Transcriptional regulator, Fis family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B137_PARDP
LuxR family transcriptional regulator {ECO:0000313|EMBL:KFL27259.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Fis family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2920_curated_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2928..3413
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B136_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KFL27258.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3480..4154
DNA (675bp) protein (225aa)
Ankyrin n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHP5_RHIRD
Ankyrin {ECO:0000313|EMBL:EGP54114.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
ankyrin; K06867
SCNpilot_expt_1000_bf_scaffold_2920_curated_6
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4491..6224
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VA73_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ14814.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6240..6944)
DNA (705bp) protein (235aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Thalassospira lucentensis RepID=UPI0003B472F3
Putative glutathione S-transferase enzyme with thioredoxin-like domain protein {ECO:0000313|EMBL:KFC70468.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_2920_curated_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7640..7912
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000362918B
Urease accessory protein UreD; K03190 urease accessory protein
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_2920_curated_9
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7928..8230
DNA (303bp) protein (101aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
ureA; urease subunit gamma; K01430 urease subunit gamma [EC:3.5.1.5]
Urease subunit gamma n=1 Tax=Rhizobium sp. RepID=L0NJ09_RHISP
SCNpilot_expt_1000_bf_scaffold_2920_curated_10
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8276..8869
DNA (594bp) protein (198aa)
UPI0003CF66D3 related cluster n=1 Tax=unknown RepID=UPI0003CF66D3
Protein hupE {ECO:0000313|EMBL:ESX48276.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
urease accessory protein UreJ; K03192 urease accessory protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8881..9186
DNA (306bp) protein (102aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ureB; urease subunit beta; K01429 urease subunit beta [EC:3.5.1.5]
Urease subunit beta n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1S1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2920_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9212..9697)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NVC1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41794.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_13
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9782..10333)
DNA (552bp) protein (184aa)
Peptidoglycan bound protein (LPXTG motif), putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA44_PELHB
Uncharacterized protein {ECO:0000313|EMBL:AKI01596.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
peptidoglycan bound protein (LPXTG motif)
SCNpilot_expt_1000_bf_scaffold_2920_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10699..12231
DNA (1533bp) protein (511aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Urease subunit alpha n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKJ3_9RHIZ
urease, alpha subunit
SCNpilot_expt_1000_bf_scaffold_2920_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12285..12581
DNA (297bp) protein (99aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYY6_RHOP2
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ABD06574.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_2920_curated_16
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12581..13183
DNA (603bp) protein (201aa)
Glutathione S-transferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKJ4_9RHIZ
Glutathione S-transferase {ECO:0000313|EMBL:CDX16585.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
glutathione S-transferase
SCNpilot_expt_1000_bf_scaffold_2920_curated_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13180..13773
DNA (594bp) protein (198aa)
Urease accessory protein UreE n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKJ5_9RHIZ
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
urease accessory protein UreE; K03187 urease accessory protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13727..14437
DNA (711bp) protein (237aa)
Urease accessory protein UreF n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1C1_9RHIZ
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
urease accessory protein UreF
SCNpilot_expt_1000_bf_scaffold_2920_curated_19
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14619..14846
DNA (228bp) protein (76aa)
UPI0003CF64EE related cluster n=1 Tax=unknown RepID=UPI0003CF64EE
Uncharacterized protein {ECO:0000313|EMBL:ESY83838.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15543..16160)
DNA (618bp) protein (206aa)
Nucleoside triphosphate hydrolase domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKI1_9RHIZ
Nucleoside triphosphate hydrolase domain-containing protein {ECO:0000313|EMBL:EHK58679.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATPase AAA
SCNpilot_expt_1000_bf_scaffold_2920_curated_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16306..17334)
DNA (1029bp) protein (343aa)
TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I230_9RHIZ
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:EHK52916.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
TRAP transporter solute receptor
SCNpilot_expt_1000_bf_scaffold_2920_curated_22
unknown

Not on your lists

comp(17361..18077)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2920_curated_23

Not on your lists

18100..18696
DNA (597bp) protein (199aa)
methionine synthase, vitamin-B12 independent; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
Vitamin-B12 independent methionine synthase family protein n=1 Tax=uncultured bacterium ws406H10 RepID=I1X5F3_9BACT
Vitamin-B12 independent methionine synthase family protein {ECO:0000313|EMBL:AFI78728.1}; TaxID=1131831 species="Bacteria; environmental samples.;" source="uncultured bacterium ws406H10.;"
SCNpilot_expt_1000_bf_scaffold_2920_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18907..20052
DNA (1146bp) protein (382aa)
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:EYR81549.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR81549.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1] rbh
sarcosine oxidase subunit beta n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B492E4
SCNpilot_expt_1000_bf_scaffold_2920_curated_25
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20066..20332
DNA (267bp) protein (89aa)
sarcosine oxidase subunit delta; K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase delta subunit n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98CA6_RHILO
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:KHQ50689.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
SCNpilot_expt_1000_bf_scaffold_2920_curated_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21784..23079
DNA (1296bp) protein (432aa)
sarcosine oxidase subunit alpha; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
(2Fe-2S)-binding protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B51202
Sarcosine oxidase alpha subunit {ECO:0000313|EMBL:CDX35958.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_2920_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23072..23629
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B68B5D
Uncharacterized protein {ECO:0000313|EMBL:EYR81546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2920_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23704..25116
DNA (1413bp) protein (471aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
6-phosphogluconate dehydrogenase (EC:1.1.1.44); K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44] rbh
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKM5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2920_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25132..26226)
DNA (1095bp) protein (365aa)
Transcription regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKM4_9RHIZ
Transcription regulator {ECO:0000313|EMBL:EHK58722.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2920_curated_30
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26619..27869
DNA (1251bp) protein (417aa)
Extracellular solute-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y501_9RHIZ
ABC-type sugar transport system, periplasmic compo nent {ECO:0000313|EMBL:CDP53561.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
Displaying items 1-30 of 39 in total

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