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SCNpilot_expt_1000_bf_scaffold_4740_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4740_curated_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..290
DNA (288bp) protein (96aa)
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MK59_9RHIZ
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:EKF17607.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
TRAP dicarboxylate transporter-DctP subunit
SCNpilot_expt_1000_bf_scaffold_4740_curated_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

455..982
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PJB0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41242.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4740_curated_3
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

982..2304
DNA (1323bp) protein (441aa)
TRAP dicarboxylate transporter subunit DctM id=5079366 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
TRAP dicarboxylate transporter subunit DctM
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_4740_curated_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2345..2572)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH6_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ51526.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4740_curated_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2611..2949)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YJB9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX44350.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
TIGR01244 family protein
SCNpilot_expt_1000_bf_scaffold_4740_curated_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2979..3869)
DNA (891bp) protein (297aa)
Beta-lactamase-like protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I758_AZOC5
Beta-lactamase {ECO:0000313|EMBL:KFL31205.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
beta-lactamase
SCNpilot_expt_1000_bf_scaffold_4740_curated_7
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4028..5179)
DNA (1152bp) protein (384aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMU1_METNO
CaiA protein {ECO:0000313|EMBL:BAQ48921.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4740_curated_8
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5297..5491
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F8R2_9RHIZ
Cytotoxic translational repressor of toxin-antitoxin stability system {ECO:0000313|EMBL:AKI03289.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4740_curated_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5504..5863
DNA (360bp) protein (120aa)
Transcriptional regulator, XRE family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F5X9_9RHIZ
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CCV12702.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4740_curated_10
bacterium YEK0313, Bacteria

Not on your lists

comp(5871..6317)
DNA (447bp) protein (149aa)
pimeloyl-CoA dehydrogenase, large subunit; K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFV0_MOBAS
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CEJ15000.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_4740_curated_11
unknown

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6416..6601
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4740_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7162..8343)
DNA (1182bp) protein (394aa)
Acetyl-CoA C-acyltransferase (EC:2.3.1.16); K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Acetyl-CoA C-acetyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P090_9BRAD
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:EKS32549.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_4740_curated_13
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8385..10247)
DNA (1863bp) protein (621aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031AD367
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ESY67088.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_4740_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10511..10855)
DNA (345bp) protein (115aa)
pcaL; beta-ketoadipate enol-lactone hydrolase; K01055 3-oxoadipate enol-lactonase [EC:3.1.1.24]
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:CCE99571.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CCE99571.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Beta-ketoadipate enol-lactone hydrolase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AET9_RHIFH
SCNpilot_expt_1000_bf_scaffold_4740_curated_15
unknown

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10885..11109
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4740_curated_16
unknown

Not on your lists

11628..12374
DNA (747bp) protein (249aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4740_curated_17
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12421..13206
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003671640
Molybdenum ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJF68256.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
modA; ABC transporter substrate-binding protein (molybdate); K02020 molybdate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4740_curated_18
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13223..13921
DNA (699bp) protein (233aa)
Molybdate ABC transporter permease protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUJ2_9PROT
Molybdate ABC transporter permease protein {ECO:0000313|EMBL:EKE68890.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
molybdate ABC transporter inner membrane protein; K02018 molybdate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4740_curated_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14042..14707
DNA (666bp) protein (222aa)
Molybdenum import ATP-binding protein ModC {ECO:0000256|HAMAP-Rule:MF_01705}; EC=3.6.3.29 {ECO:0000256|HAMAP-Rule:MF_01705};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C5B61
molybdenum ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4740_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14707..14961
DNA (255bp) protein (85aa)
modC; molybdenum ABC transporter ATP-binding protein (EC:3.6.3.29); K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29]
Molybdenum import ATP-binding protein ModC {ECO:0000256|HAMAP-Rule:MF_01705}; EC=3.6.3.29 {ECO:0000256|HAMAP-Rule:MF_01705};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C5B61
SCNpilot_expt_1000_bf_scaffold_4740_curated_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14961..15317
DNA (357bp) protein (119aa)
Putative transcriptional regulator, ModE family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0K1_STAND
ModE family transcriptional regulator; K02019 molybdate transport system regulatory protein
Putative transcriptional regulator, ModE family {ECO:0000313|EMBL:ADH91322.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_4740_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15320..15790)
DNA (471bp) protein (157aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHP9_NITHX
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ABE64248.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_4740_curated_23
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15945..17135
DNA (1191bp) protein (397aa)
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:CDX32541.1}; EC=1.3.8.6 {ECO:0000313|EMBL:CDX32541.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
acyl-CoA dehydrogenase domain-containing protein (EC:1.3.99.7); K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAB9_MESOW
SCNpilot_expt_1000_bf_scaffold_4740_curated_24
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17390..17866
DNA (477bp) protein (159aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI0003785392
Piperideine-6-carboxylate dehydrogenase domain protein {ECO:0000313|EMBL:AID32208.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
Displaying 24 items

View Taxonomy