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SCNpilot_expt_1000_bf_scaffold_3517_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3517_curated_1
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(145..936)
DNA (792bp) protein (264aa)
Diguanylate cyclase n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G7Q6_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:ESY23757.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_3517_curated_2
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1048..2010)
DNA (963bp) protein (321aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030FB87D
tRNA isopentenyltransferase MiaA
SCNpilot_expt_1000_bf_scaffold_3517_curated_3
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2045..2863
DNA (819bp) protein (273aa)
phosphoserine phosphatase; K01079 phosphoserine phosphatase [EC:3.1.3.3]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003647714
Phosphoserine phosphatase {ECO:0000313|EMBL:ESW68806.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
SCNpilot_expt_1000_bf_scaffold_3517_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2860..3426
DNA (567bp) protein (189aa)
GCN5-like N-acetyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTB9_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EHK55897.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_3517_curated_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3442..4989)
DNA (1548bp) protein (516aa)
protease Do; K01362 [EC:3.4.21.-]
Protease Do n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTC0_9RHIZ
Protease Do {ECO:0000313|EMBL:EHK55898.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_3517_curated_6
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5126..5311)
DNA (186bp) protein (62aa)
UPI0003CEBB69 related cluster n=1 Tax=unknown RepID=UPI0003CEBB69
hypothetical protein; K09937 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY75975.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_expt_1000_bf_scaffold_3517_curated_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5319..6302)
DNA (984bp) protein (328aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F891C
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
membrane protease subunit, stomatin/prohibitin
SCNpilot_expt_1000_bf_scaffold_3517_curated_8
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6302..7423)
DNA (1122bp) protein (374aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
HflK protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C312_9RHIZ
HflK protein {ECO:0000313|EMBL:EIM76214.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_3517_curated_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7563..7856)
DNA (294bp) protein (98aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
folA; dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3M4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3517_curated_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8070..9110)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE80_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14671.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3517_curated_11
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9176..10051)
DNA (876bp) protein (292aa)
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase {ECO:0000255|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000255|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000255|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000255|HAMAP-Rule:MF_00008};; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
Thymidylate synthase n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5M2Z0_RHOSH
Displaying 11 items

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