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SCNpilot_expt_1000_bf_scaffold_3201_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3201_curated_1
unknown

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comp(1..102)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3201_curated_2
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(232..1074)
DNA (843bp) protein (281aa)
GCN5-related N-acetyltransferase n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8UA93_DEIML
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADV67982.1}; TaxID=709986 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946; / LB-34).;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_3
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1071..1487)
DNA (417bp) protein (139aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol monophosphatase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C745_9RHIZ
Inositol monophosphatase {ECO:0000313|EMBL:EIM77647.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_4
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2029..2595)
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=EFP_MESSB rbh
elongation factor P; K02356 elongation factor P
Elongation factor P {ECO:0000255|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000255|HAMAP-Rule:MF_00141};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_5
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2689..3666)
DNA (978bp) protein (326aa)
Sel1 domain-containing protein repeat-containing protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C743_9RHIZ
Sel1 domain-containing protein repeat-containing protein {ECO:0000313|EMBL:EIM77645.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein; K07126 rbh
SCNpilot_expt_1000_bf_scaffold_3201_curated_6
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3663..4325)
DNA (663bp) protein (221aa)
Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:ESY80623.1}; EC=2.5.1.3 {ECO:0000313|EMBL:ESY80623.1};; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
thiamine-phosphate pyrophosphorylase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036786F0
SCNpilot_expt_1000_bf_scaffold_3201_curated_7
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4492..5259
DNA (768bp) protein (256aa)
Putative permease n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HLL2_9RHIZ
Putative permease {ECO:0000313|EMBL:EJM99370.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_3201_curated_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5285..6307
DNA (1023bp) protein (341aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-dependent synthetase and ligase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TA60_MESCW
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADV14265.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6285..6890
DNA (606bp) protein (202aa)
Acetate/butyrate--CoA ligase AAE7, peroxisomal {ECO:0000313|EMBL:CDX15484.1}; EC=6.2.1.1 {ECO:0000313|EMBL:CDX15484.1};; EC=6.2.1.2 {ECO:0000313|EMBL:CDX15484.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C184DC
SCNpilot_expt_1000_bf_scaffold_3201_curated_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6958..7509)
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y430_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH13481.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3201_curated_11
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8061..8597
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YGQ8_MESOW
hypothetical protein; K13592 regulator of CtrA degradation
Uncharacterized protein {ECO:0000313|EMBL:AEH85792.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_12
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8720..9607)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N3P4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF18898.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_3201_curated_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9632..10147
DNA (516bp) protein (172aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Crossover junction endodeoxyribonuclease ruvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3A7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3201_curated_14
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10215..10481
DNA (267bp) protein (89aa)
UPI0003CF3C45 related cluster n=1 Tax=unknown RepID=UPI0003CF3C45
Regulator protein of stationary/sporulation gene expression {ECO:0000313|EMBL:ESW81904.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
looped-hinge helix DNA binding domain, AbrB family
SCNpilot_expt_1000_bf_scaffold_3201_curated_15
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10576..10875
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EKV1_9RHIZ
PilT protein domain protein {ECO:0000313|EMBL:CDX25181.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K07062
SCNpilot_expt_1000_bf_scaffold_3201_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10872..11492
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] rbh
Holliday junction DNA helicase RuvA n=1 Tax=Hoeflea sp. 108 RepID=UPI000378406D
SCNpilot_expt_1000_bf_scaffold_3201_curated_17

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11547..11843
DNA (297bp) protein (99aa)
Regulators of stationary/sporulation gene expression protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRI7_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KKN85590.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Regulators of stationary/sporulation gene expression protein
SCNpilot_expt_1000_bf_scaffold_3201_curated_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11840..12232
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00038216B2
PilT protein domain protein {ECO:0000313|EMBL:CDN55259.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3201_curated_19
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12229..13266
DNA (1038bp) protein (346aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y424_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3201_curated_20
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13266..13739
DNA (474bp) protein (158aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2MZN1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40698.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14002..14718
DNA (717bp) protein (239aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N3P2_9RHIZ
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EKF18893.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ
SCNpilot_expt_1000_bf_scaffold_3201_curated_22
unknown

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comp(15200..15526)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3201_curated_23
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15660..16196
DNA (537bp) protein (179aa)
UPI0003CFAA2D related cluster n=1 Tax=unknown RepID=UPI0003CFAA2D
TonB family protein
TonB family protein {ECO:0000313|EMBL:AGB43800.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_24
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16234..17556
DNA (1323bp) protein (441aa)
Protein TolB n=1 Tax=Nitratireductor indicus C115 RepID=K2PHU3_9RHIZ
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Tol-Pal system beta propeller repeat protein TolB; K03641 TolB protein
SCNpilot_expt_1000_bf_scaffold_3201_curated_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17753..18256
DNA (504bp) protein (168aa)
Outer membrane lipoprotein Omp16 homolog n=9 Tax=Rhizobium meliloti RepID=OMP16_RHIME
omp16; outer membrane lipoprotein Omp16
Outer membrane lipoprotein Omp16 homolog; Flags: Precursor;; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_3201_curated_26
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18432..19487
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MA90_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF19071.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
tol-pal system protein YbgF
SCNpilot_expt_1000_bf_scaffold_3201_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20093..20845
DNA (753bp) protein (251aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLG0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3201_curated_28
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20963..22147
DNA (1185bp) protein (395aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TN14_MESCW
Displaying 28 items

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