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SCNpilot_expt_1000_bf_scaffold_6209_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6209_curated_1
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1050)
DNA (1050bp) protein (350aa)
Amidohydrolase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV20_CAUSK
amidohydrolase
Uncharacterized protein {ECO:0000313|EMBL:GAM97365.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
SCNpilot_expt_1000_bf_scaffold_6209_curated_2
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1103..2104)
DNA (1002bp) protein (334aa)
peptidase M19; K01273 membrane dipeptidase [EC:3.4.13.19]
Zn-dependent dipeptidase, microsomal dipeptidase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGE7_9SPHN
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:EJL30844.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_6209_curated_3
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2288..3292)
DNA (1005bp) protein (335aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031E5A8C
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11794.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oppF; oligopeptide transporter (ABC superfamily, ATP_bind); K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6209_curated_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3289..4275)
DNA (987bp) protein (329aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E67BA3
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11793.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oligopeptide/dipeptide abc transporter, atpase subunit; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6209_curated_5
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4279..5199)
DNA (921bp) protein (307aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ4_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH11792.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
dppC; dipeptide ABC transporter membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6209_curated_6
unknown

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5336..5530
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6209_curated_7
unknown

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5540..5833
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6209_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6315..7247)
DNA (933bp) protein (311aa)
ABC transporter substrate-binding protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B3021E
putative dipeptide transport binding transmembrane protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_6209_curated_9
unknown

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7341..8087
DNA (747bp) protein (249aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6209_curated_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8318..8959
DNA (642bp) protein (214aa)
TetR family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BYT0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34450.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6209_curated_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9279..10532
DNA (1254bp) protein (418aa)
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase, beta subunit family, heterotetrameric form n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGF6_9SPHN
Sarcosine oxidase, beta subunit family, heterotetrameric form {ECO:0000313|EMBL:EJL30854.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_6209_curated_12
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10542..10835
DNA (294bp) protein (98aa)
soxD; sarcosine oxidase delta subunit (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase delta subunit n=1 Tax=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) RepID=B2GHY0_KOCRD
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:KJK44334.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
SCNpilot_expt_1000_bf_scaffold_6209_curated_13
unknown

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11263..11931
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6209_curated_14
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12690..13802
DNA (1113bp) protein (371aa)
glycine cleavage T protein (aminomethyl transferase); K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, alpha subunit family, heterotetrameric form n=1 Tax=Novosphingobium sp. AP12 RepID=J3AEV9_9SPHN
Sarcosine oxidase, alpha subunit family, heterotetrameric form {ECO:0000313|EMBL:EJL30856.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_6209_curated_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13795..14400
DNA (606bp) protein (202aa)
Sarcosine oxidase gamma subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2PT18_9SPHN
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:EJL30857.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
sarcosine oxidase, gamma subunit
SCNpilot_expt_1000_bf_scaffold_6209_curated_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14897..17239
DNA (2343bp) protein (781aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035EBCD6
CRISPR-associated protein; K09952 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6209_curated_17
unknown

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17236..17349
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 17 items

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