ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1857_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1857_curated_1
unknown

Not on your lists

3..161
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1857_curated_2
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

172..771
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003756B32
hypothetical protein rbh
Mll2043 protein {ECO:0000313|EMBL:BAB49273.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(783..1346)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZT8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53791.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_4
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1529..2965)
DNA (1437bp) protein (479aa)
UPI0003CE497E related cluster n=1 Tax=unknown RepID=UPI0003CE497E
D-2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:ESX67015.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
FAD linked oxidase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_5
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2965..3939)
DNA (975bp) protein (325aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y960_9RHIZ
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_6
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4135..4680
DNA (546bp) protein (182aa)
UPI0003CDF7AD related cluster n=2 Tax=unknown RepID=UPI0003CDF7AD
Uncharacterized protein {ECO:0000313|EMBL:ESY06115.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4780..5175
DNA (396bp) protein (132aa)
Mll7437 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q986B3_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX55385.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5220..5441)
DNA (222bp) protein (74aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
Glycyl-tRNA synthetase subunit beta n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZT4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1857_curated_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6146..7795
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VD84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN89007.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7639..8229)
DNA (591bp) protein (197aa)
Putative isochorismatase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPA3_9PROT
Putative isochorismatase {ECO:0000313|EMBL:EKE76382.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
isochorismatase
SCNpilot_expt_1000_bf_scaffold_1857_curated_11
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8229..9149)
DNA (921bp) protein (307aa)
glyQ; glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
Glycine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00254}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00254};; Glycyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00254}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF_00254};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Glycine--tRNA ligase alpha subunit n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=SYGA_MESSB rbh
SCNpilot_expt_1000_bf_scaffold_1857_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9323..11371)
DNA (2049bp) protein (683aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZT1_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53784.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_13
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11510..13324)
DNA (1815bp) protein (605aa)
UPI0003D04427 related cluster n=1 Tax=unknown RepID=UPI0003D04427
Chloride channel protein {ECO:0000313|EMBL:ESY99493.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
chloride channel protein; K03281 chloride channel protein, CIC family rbh
SCNpilot_expt_1000_bf_scaffold_1857_curated_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13451..14467)
DNA (1017bp) protein (339aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Polyprenyl synthetase n=1 Tax=Nitratireductor indicus C115 RepID=K2P1V9_9RHIZ
Polyprenyl synthetase {ECO:0000313|EMBL:EKF41376.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14628..14852
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PJM7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41377.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Protein of unknown function (DUF2007)
SCNpilot_expt_1000_bf_scaffold_1857_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14849..15640
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZS5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53778.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
methyltransferase small
SCNpilot_expt_1000_bf_scaffold_1857_curated_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15679..16569
DNA (891bp) protein (297aa)
peptidase S49 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DAE8FE
Peptidase S49 {ECO:0000313|EMBL:CCV12308.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
peptidase S49
SCNpilot_expt_1000_bf_scaffold_1857_curated_18
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16635..16820
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y944_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11713.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1857_curated_19
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16840..17727
DNA (888bp) protein (296aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KS08_MESAW
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
SCNpilot_expt_1000_bf_scaffold_1857_curated_20
unknown

Not on your lists

comp(17584..18168)
DNA (585bp) protein (195aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1857_curated_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19101..20201
DNA (1101bp) protein (367aa)
Radical SAM n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KH1_MESSB
radical SAM family protein
Radical SAM {ECO:0000313|EMBL:ABG62104.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_22
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20348..21004
DNA (657bp) protein (219aa)
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease HII {ECO:0000255|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000255|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00052};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Ribonuclease HII n=2 Tax=Mesorhizobium sp. (strain BNC1) RepID=RNH2_MESSB
SCNpilot_expt_1000_bf_scaffold_1857_curated_23
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21120..21611)
DNA (492bp) protein (164aa)
H+transporting two-sector ATPase subunit B/B'; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
UPI0003D06AB8 related cluster n=1 Tax=unknown RepID=UPI0003D06AB8
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_24
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21621..21983)
DNA (363bp) protein (121aa)
F0F1 ATP synthase subunit B'; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C8X1_9RHIZ
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_25
unknown

Not on your lists

comp(22290..22517)
DNA (228bp) protein (76aa)
F0F1 ATP synthase subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
F0F1 ATP synthase subunit C n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G570_9RHIZ
ATP synthase subunit c {ECO:0000313|EMBL:CPR22431.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_26
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22582..23343)
DNA (762bp) protein (254aa)
ATP synthase F0 subunit alpha; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
F0F1 ATP synthase subunit A n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EF47B9
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_27
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23387..23734)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KI0_MESSB
hypothetical protein; K02116 ATP synthase protein I
Uncharacterized protein {ECO:0000313|EMBL:ABG62095.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1857_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23974..25158)
DNA (1185bp) protein (395aa)
Cell wall hydrolase SleB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZR1_9RHIZ
Cell wall hydrolase SleB {ECO:0000313|EMBL:EHK53764.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1857_curated_29
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25206..26789)
DNA (1584bp) protein (528aa)
GTP-binding protein Der n=1 Tax=Hoeflea sp. 108 RepID=UPI000382E39D
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ribosome-associated GTPase EngA
SCNpilot_expt_1000_bf_scaffold_1857_curated_30
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26795..27460)
DNA (666bp) protein (222aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C44B2
Membrane protein {ECO:0000313|EMBL:ESZ02344.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
hypothetical protein
Displaying items 1-30 of 50 in total

View Taxonomy