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SCNpilot_expt_1000_bf_scaffold_1723_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1723_curated_1
unknown

Not on your lists

comp(565..768)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1723_curated_2
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1144..2109)
DNA (966bp) protein (322aa)
UPI0003CF77A9 related cluster n=1 Tax=unknown RepID=UPI0003CF77A9
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
AraC family transcriptional regulator {ECO:0000313|EMBL:ESY81531.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_expt_1000_bf_scaffold_1723_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(2175..3455)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002E11166
TRAP C4-dicarboxylate transporter, DctM (12TM)subunit
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
SCNpilot_expt_1000_bf_scaffold_1723_curated_4
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3462..4010)
DNA (549bp) protein (183aa)
Tripartite ATP-independent periplasmic transporter, DctQ component n=3 Tax=Rhodobacter RepID=A3PQL8_RHOS1
tripartite ATP-independent periplasmic transporter DctQ
Putative N-acetylneuraminate transporter {ECO:0000313|EMBL:EKX57993.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
SCNpilot_expt_1000_bf_scaffold_1723_curated_5
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(4007..5008)
DNA (1002bp) protein (334aa)
TRAP transporter solute receptor, DctP family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y827_9BACT
TRAP transporter substrate-binding protein
Tax=RBG_19FT_COMBO_JS1_35_14_curated
SCNpilot_expt_1000_bf_scaffold_1723_curated_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5045..6619)
DNA (1575bp) protein (525aa)
N-acyl-D-glutamate deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036ED447
N-acyl-D-glutamate deacylase (N-acyl-D-glutamate amidohydrolase) and to D-aminoacylase (N-acyl-D-amino-acid deacylase)-like protein {ECO:0000313|EMBL:AEG93825.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_1723_curated_7
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6622..8370)
DNA (1749bp) protein (583aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Burkholderia sp. YI23 RepID=G8M9I4_9BURK
5-oxoprolinase ATP-hydrolyzing {ECO:0000313|EMBL:BAO86377.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
SCNpilot_expt_1000_bf_scaffold_1723_curated_8
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8367..10493)
DNA (2127bp) protein (709aa)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:EDT43854.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EDT43854.1};; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1SXU5_9BURK
SCNpilot_expt_1000_bf_scaffold_1723_curated_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10586..11491
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037858D6
Bradyrhizobium elkanii strain UASWS1015 Contig164, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51648.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1723_curated_10
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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12241..13506
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae MGH 32 RepID=V3Q5C0_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:CDI04329.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_11
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13512..16301
DNA (2790bp) protein (930aa)
UPI0003CEAE56 related cluster n=1 Tax=unknown RepID=UPI0003CEAE56
Uncharacterized protein {ECO:0000313|EMBL:CDI04328.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_12
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16298..17368
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2K9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDI04327.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_13
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17365..22350
DNA (4986bp) protein (1662aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae MGH 32 RepID=V3P088_KLEPN
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:CDI04326.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_14
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23194..23994)
DNA (801bp) protein (267aa)
Putative phage integrase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YCE0_9RHIZ
Putative phage integrase {ECO:0000313|EMBL:EHH10619.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
phage integrase
SCNpilot_expt_1000_bf_scaffold_1723_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25478..25651
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PL13_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41832.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
lemA; cytoplasmic membrane protein; K03744 LemA protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26020..26493
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLY0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58273.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K06872 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26496..27134
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F2W5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX25551.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K08988 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_18
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27203..27757
DNA (555bp) protein (185aa)
N-acetyltransferase GCN5 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DE652E
Uncharacterized protein {ECO:0000313|EMBL:CCV10801.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_1723_curated_19
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28223..28396
DNA (174bp) protein (58aa)
inorganic pyrophosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
inorganic pyrophosphatase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037D8BB8
SCNpilot_expt_1000_bf_scaffold_1723_curated_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28448..31906)
DNA (3459bp) protein (1153aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
pyruvate carboxylase; K01958 pyruvate carboxylase [EC:6.4.1.1]
Pyruvate carboxylase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N3Z0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1723_curated_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32136..33233)
DNA (1098bp) protein (366aa)
Extracellular ligand-binding receptor n=1 Tax=Nitratireductor indicus C115 RepID=K2NRQ4_9RHIZ
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EKF42035.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_22
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(33389..33742)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BS31_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM72383.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_23
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33746..34471)
DNA (726bp) protein (242aa)
ABC transporter n=1 Tax=Nitratireductor indicus C115 RepID=K2N3T5_9RHIZ
General L-amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFB08741.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_24
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34468..35700)
DNA (1233bp) protein (411aa)
ABC transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M521_9RHIZ
ABC transporter {ECO:0000313|EMBL:KFB08740.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
ABC transporter related protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_25
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35700..37316)
DNA (1617bp) protein (539aa)
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2P3T3_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EKF42031.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_26
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37316..38245)
DNA (930bp) protein (310aa)
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2NRP7_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EKF42030.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1723_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38547..39548)
DNA (1002bp) protein (334aa)
Hydroxyproline-2-epimerase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLU1_9RHIZ
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:EHK58349.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
proline racemase
SCNpilot_expt_1000_bf_scaffold_1723_curated_28
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39557..39778)
DNA (222bp) protein (74aa)
UPI0003CF5142 related cluster n=1 Tax=unknown RepID=UPI0003CF5142
FAD dependent oxidoreductase {ECO:0000313|EMBL:CDX25330.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
glycine/D-amino acid oxidase, deaminating
Displaying 28 items

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