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SCNpilot_expt_1000_bf_scaffold_2565_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2565_curated_1
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..747)
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y842_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH12080.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_2
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(852..1613)
DNA (762bp) protein (254aa)
Glycosyl transferase family 2 n=1 Tax=Cyanothece sp. (strain PCC 8802) RepID=C7QLJ5_CYAP0
Family 2 glycosyl transferase {ECO:0000313|EMBL:KCZ87584.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
family 2 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_2565_curated_3
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2029..2505
DNA (477bp) protein (159aa)
MaoC-like dehydratase n=1 Tax=Nitratireductor indicus C115 RepID=K2N0L3_9RHIZ
MaoC-like dehydratase {ECO:0000313|EMBL:EKF41043.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
acyl dehydratase
SCNpilot_expt_1000_bf_scaffold_2565_curated_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2508..3374
DNA (867bp) protein (289aa)
Citryl-CoA lyase (EC:4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
citrate lyase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003728690
Citryl-CoA lyase {ECO:0000313|EMBL:CDX12082.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_5
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3379..3987)
DNA (609bp) protein (203aa)
UPI0003CF9720 related cluster n=1 Tax=unknown RepID=UPI0003CF9720
Flavin reductase {ECO:0000313|EMBL:ESZ01318.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
conserved protein of DIM6/NTAB family
SCNpilot_expt_1000_bf_scaffold_2565_curated_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3991..4575)
DNA (585bp) protein (195aa)
Nitroreductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVM5_9RHIZ
Nitroreductase {ECO:0000313|EMBL:EHK55242.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
nitroreductase
SCNpilot_expt_1000_bf_scaffold_2565_curated_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5300..5818
DNA (519bp) protein (173aa)
UPI0003CF7AD9 related cluster n=1 Tax=unknown RepID=UPI0003CF7AD9
Uncharacterized protein {ECO:0000313|EMBL:ESW80192.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5873..7858)
DNA (1986bp) protein (662aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWF6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2565_curated_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8121..9305)
DNA (1185bp) protein (395aa)
Serine-type D-Ala-D-Ala carboxypeptidase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X0W7_OCHA4
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EXL01697.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9455..9790)
DNA (336bp) protein (112aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Nitratireductor indicus C115 RepID=K2NNS6_9RHIZ
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9780..10145)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWF8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55001.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10145..10435)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWF9_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55002.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
DNA polymerase beta domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_13
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10448..10894)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JM3_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62402.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_14
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11122..11787
DNA (666bp) protein (222aa)
GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
PREDICTED: GTP cyclohydrolase 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C133CF
SCNpilot_expt_1000_bf_scaffold_2565_curated_15
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11906..12190
DNA (285bp) protein (95aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y858_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2565_curated_16
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12307..13278
DNA (972bp) protein (324aa)
Patatin n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0F7_9RHIZ
Patatin {ECO:0000313|EMBL:KFB10251.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
putative esterase of the alpha-beta hydrolase superfamily
SCNpilot_expt_1000_bf_scaffold_2565_curated_17
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13283..15088)
DNA (1806bp) protein (602aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0F8_9RHIZ
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIM75310.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_18
unknown

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15253..15753
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2565_curated_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15647..16759)
DNA (1113bp) protein (371aa)
glpX; fructose 1,6-bisphosphatase II; K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11]
Fructose-1,6-bisphosphatase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0F9_9RHIZ
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_20
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16903..18213)
DNA (1311bp) protein (437aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
homoserine dehydrogenase; K00003 homoserine dehydrogenase [EC:1.1.1.3]
UPI0003CDD114 related cluster n=1 Tax=unknown RepID=UPI0003CDD114
SCNpilot_expt_1000_bf_scaffold_2565_curated_21
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18257..19474)
DNA (1218bp) protein (406aa)
aatCch; aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WY28_9RHIZ
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJK87260.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_22
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19588..19920)
DNA (333bp) protein (111aa)
UPI0003CFE5AE related cluster n=1 Tax=unknown RepID=UPI0003CFE5AE
Uncharacterized protein {ECO:0000313|EMBL:ESZ14984.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_23
unknown

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comp(19932..20366)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2565_curated_24
unknown

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comp(20565..20885)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2565_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22107..23480
DNA (1374bp) protein (458aa)
Peptidase M15A n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWH1_9RHIZ
Peptidase M15A {ECO:0000313|EMBL:EHK55014.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2565_curated_26
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23710..24027)
DNA (318bp) protein (106aa)
UPI0003CFE6E8 related cluster n=1 Tax=unknown RepID=UPI0003CFE6E8
Uncharacterized protein {ECO:0000313|EMBL:EZQ13785.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_27
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24104..24340
DNA (237bp) protein (79aa)
UPI0003CF4B22 related cluster n=1 Tax=unknown RepID=UPI0003CF4B22
Uncharacterized protein {ECO:0000313|EMBL:ESX50211.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2565_curated_28
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24337..24738
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ENK9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV05755.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SCNpilot_expt_1000_bf_scaffold_2565_curated_29
unknown

Not on your lists

24735..24926
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2565_curated_30
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24926..25600
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IY1_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62644.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying items 1-30 of 43 in total

View Taxonomy