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SCNpilot_expt_1000_bf_scaffold_2683_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2683_curated_1
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..383)
DNA (381bp) protein (127aa)
Uronate isomerase {ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|SAAS:SAAS00013438};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
uronate isomerase; K01812 glucuronate isomerase [EC:5.3.1.12]
Uronate isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBE4_PELHB
SCNpilot_expt_1000_bf_scaffold_2683_curated_2
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1230..2513)
DNA (1284bp) protein (428aa)
C4-dicarboxylate ABC transporter n=1 Tax=Martelella mediterranea RepID=UPI00036F170B
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:AJY47563.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
C4-dicarboxylate transporter permease large protein
SCNpilot_expt_1000_bf_scaffold_2683_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2523..3041)
DNA (519bp) protein (173aa)
TRAP-type C4-dicarboxylate transport system, small permease component n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2K4_POLGS
TRAP-type C4-dicarboxylate transporter, small permease
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:ADZ70918.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_2683_curated_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3102..4085)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000370D669
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:ADZ70917.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_2683_curated_5
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4117..4812)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035CFD51
GntR family transcriptional regulator {ECO:0000313|EMBL:AJY47560.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2683_curated_6
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4948..6165
DNA (1218bp) protein (406aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
mannonate dehydratase; K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000361F81B
SCNpilot_expt_1000_bf_scaffold_2683_curated_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6165..7646
DNA (1482bp) protein (494aa)
D-mannonate oxidoreductase {ECO:0000313|EMBL:ESR27029.1}; EC=1.1.1.57 {ECO:0000313|EMBL:ESR27029.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
uxuB; D-mannonate oxidoreductase (EC:1.1.1.57); K00040 fructuronate reductase [EC:1.1.1.57]
D-mannonate oxidoreductase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RP38_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2683_curated_8
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

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7655..8563
DNA (909bp) protein (303aa)
2-dehydro-3-deoxygluconokinase {ECO:0000313|EMBL:ESS14419.1}; EC=2.7.1.45 {ECO:0000313|EMBL:ESS14419.1};; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
2-dehydro-3-deoxygluconokinase (EC:2.7.1.45)
2-dehydro-3-deoxygluconokinase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B32DD9
SCNpilot_expt_1000_bf_scaffold_2683_curated_9
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8573..8908)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FCV8_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESX64522.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_2683_curated_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9060..9746)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000302CEE4
Sugar ABC transporter {ECO:0000313|EMBL:EXL08867.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ABC-type sugar transport system, auxiliary component
SCNpilot_expt_1000_bf_scaffold_2683_curated_11
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9780..10466)
DNA (687bp) protein (229aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
UPI0003CFD605 related cluster n=1 Tax=unknown RepID=UPI0003CFD605
SCNpilot_expt_1000_bf_scaffold_2683_curated_12
unknown

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comp(10610..10690)
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 12 items

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