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SCNpilot_expt_1000_bf_scaffold_2189_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2189_curated_1
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

947..1735
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Rhizobium loti RepID=M5AM98_RHILI
Uncharacterized protein {ECO:0000313|EMBL:BAN09969.1}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (Mesorhizobium loti).;"
radical SAM superfamily protein
SCNpilot_expt_1000_bf_scaffold_2189_curated_2
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2101..2268
DNA (168bp) protein (56aa)
UPI0003CFCC32 related cluster n=1 Tax=unknown RepID=UPI0003CFCC32
Uncharacterized protein {ECO:0000313|EMBL:ESZ20011.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2189_curated_3
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2783..3109
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PT52_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF44287.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2189_curated_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3153..3821
DNA (669bp) protein (223aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIG1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2189_curated_5
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3851..4060)
DNA (210bp) protein (70aa)
Protein SlyX homolog n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y6R9_MESOW
SlyX family protein; K03745 SlyX protein
Protein SlyX homolog {ECO:0000256|HAMAP-Rule:MF_00715}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_6
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4057..4497)
DNA (441bp) protein (147aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WXQ1_RHOS5
Putative thioesterase {ECO:0000313|EMBL:KFB08310.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4583..5011
DNA (429bp) protein (143aa)
Cytidine deaminase {ECO:0000313|EMBL:CDX11011.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CDX11011.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
cytidine deaminase; K01489 cytidine deaminase [EC:3.5.4.5]
PREDICTED: cytidine deaminase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A30E
SCNpilot_expt_1000_bf_scaffold_2189_curated_8
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5520..5966)
DNA (447bp) protein (149aa)
Uncharacterized protein {ECO:0000313|EMBL:KGD59421.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_9
unknown

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6185..6307
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2189_curated_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6323..6892)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCU6_MESCW
hypothetical protein; K06985 aspartyl protease family protein
Uncharacterized protein {ECO:0000313|EMBL:ADV10938.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7011..7640)
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9] rbh
Uracil phosphoribosyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YCB2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2189_curated_12
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

7796..8038
DNA (243bp) protein (81aa)
Prevent-host-death family protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FTC9_RHIML
Prevent-host-death protein {ECO:0000313|EMBL:KIJ70707.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
prevent-host-death family protein
SCNpilot_expt_1000_bf_scaffold_2189_curated_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8038..8466
DNA (429bp) protein (143aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
UPI0003D03FCF related cluster n=1 Tax=unknown RepID=UPI0003D03FCF
PilT protein domain-containing protein; K07062
SCNpilot_expt_1000_bf_scaffold_2189_curated_14
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8593..9336
DNA (744bp) protein (248aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003748BF2
SCNpilot_expt_1000_bf_scaffold_2189_curated_15
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9350..10924
DNA (1575bp) protein (525aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
2-polyprenylphenol 6-hydroxylase n=1 Tax=Rhizobium loti RepID=UPI000363ED01
ubiquinone biosynthesis protein AarF; K03688 ubiquinone biosynthesis protein rbh
SCNpilot_expt_1000_bf_scaffold_2189_curated_16
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10998..11279
DNA (282bp) protein (94aa)
Plasmid stabilization protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLW8_9RHIZ
Plasmid stabilization protein {ECO:0000313|EMBL:ESX80178.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11410..11682
DNA (273bp) protein (91aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000361822D
putative pilT protein, N-terminal, putative toxin of TAS system
SCNpilot_expt_1000_bf_scaffold_2189_curated_18
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11696..12892
DNA (1197bp) protein (399aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
UPI0003CF3EAD related cluster n=1 Tax=unknown RepID=UPI0003CF3EAD
Phosphopantothenate synthase {ECO:0000313|EMBL:EXL09632.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12974..13642)
DNA (669bp) protein (223aa)
Peroxidase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9R7_9RHIZ
Peroxidase
Peroxidase {ECO:0000313|EMBL:AGK57291.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13808..14008)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRY0_9PROT
Membrane protein {ECO:0000313|EMBL:EWY38064.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2189_curated_21
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14337..16223)
DNA (1887bp) protein (629aa)
UPI0003CEA2EF related cluster n=1 Tax=unknown RepID=UPI0003CEA2EF
DNA/RNA helicase, superfamily II
Helicase {ECO:0000313|EMBL:ESY90132.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_22
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16298..17896)
DNA (1599bp) protein (533aa)
peptide chain release factor 3 n=1 Tax=Hoeflea sp. 108 RepID=UPI000379FD52
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
peptide chain release factor 3; K02837 peptide chain release factor 3
SCNpilot_expt_1000_bf_scaffold_2189_curated_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17984..18175)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ31_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28828.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_1000_bf_scaffold_2189_curated_24
unknown

Not on your lists

comp(18129..18725)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2189_curated_25
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(18882..19844)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000363F2A7
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
SCNpilot_expt_1000_bf_scaffold_2189_curated_26
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19819..20178)
DNA (360bp) protein (120aa)
ArsR family transcriptional regulator n=1 Tax=Catelliglobosispora koreensis RepID=UPI00035F0648
ArsR family transcriptional regulator {ECO:0000313|EMBL:EYR66985.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2189_curated_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20303..21100)
DNA (798bp) protein (266aa)
Glutamine amidotransferase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HPW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX41625.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative glutamine amidotransferase
SCNpilot_expt_1000_bf_scaffold_2189_curated_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21120..21365)
DNA (246bp) protein (82aa)
UPI0003D01302 related cluster n=1 Tax=unknown RepID=UPI0003D01302
Uncharacterized protein {ECO:0000313|EMBL:CDX16582.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2189_curated_29
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21477..21947
DNA (471bp) protein (157aa)
AsnC family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YM75_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EHH02237.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2189_curated_30
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22025..22495
DNA (471bp) protein (157aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
UPI0003CE39A1 related cluster n=1 Tax=unknown RepID=UPI0003CE39A1
Displaying items 1-30 of 32 in total

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