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SCNpilot_expt_1000_bf_scaffold_1837_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1837_curated_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..455)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037FC082
Uncharacterized protein {ECO:0000313|EMBL:KGE02430.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(461..2065)
DNA (1605bp) protein (535aa)
Choline dehydrogenase-like flavoprotein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z154_9RHIZ
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:EIM29946.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_3
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2091..3317)
DNA (1227bp) protein (409aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z155_9RHIZ
Enolase {ECO:0000313|EMBL:KGF69162.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3389..4822)
DNA (1434bp) protein (478aa)
aldehyde dehydrogenase (EC:1.2.1.-); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000379A55D
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGE02425.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_1837_curated_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4815..5879)
DNA (1065bp) protein (355aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ATPase component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z149_9RHIZ
ABC transporter-like protein; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5945..6625)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036ECBE9
Transcriptional regulator {ECO:0000313|EMBL:KGE02427.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1837_curated_7
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6678..6905)
DNA (228bp) protein (76aa)
ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI00037445AC
ABC transporter permease {ECO:0000313|EMBL:KGE02428.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6914..7537)
DNA (624bp) protein (208aa)
ABC-type sugar transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z151_9RHIZ
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EIM29943.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_9
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7534..8463)
DNA (930bp) protein (310aa)
ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI000363D3E3
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:AKI03407.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_10
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8487..9827)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003660A6F
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE02433.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sugar ABC transporter periplasmic protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_11
Pantoea sp. 3.5.1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10114..11556)
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI000377617F
Uncharacterized protein {ECO:0000313|EMBL:KKD30957.1}; TaxID=1522060 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. 3.5.1.;"
amidase
SCNpilot_expt_1000_bf_scaffold_1837_curated_12
Desulfovibrio sp. A2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11708..12388)
DNA (681bp) protein (227aa)
Demethylmenaquinone methyltransferase family protein n=1 Tax=Desulfovibrio sp. A2 RepID=G2HA94_9DELT
Demethylmenaquinone methyltransferase family protein {ECO:0000313|EMBL:EGY25112.1}; TaxID=298701 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. A2.;"
dimethylmenaquinone methyltransferase
SCNpilot_expt_1000_bf_scaffold_1837_curated_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12394..13932)
DNA (1539bp) protein (513aa)
Extracellular solute-binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MMV1_9RHIZ
Extracellular solute-binding protein {ECO:0000313|EMBL:EKF18572.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_14
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14132..14932)
DNA (801bp) protein (267aa)
Membrane protein 91 n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0AZS0_ALCFA
Uncharacterized protein {ECO:0000313|EMBL:KGP00917.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
membrane protein 91
SCNpilot_expt_1000_bf_scaffold_1837_curated_15
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14974..16014
DNA (1041bp) protein (347aa)
Putative transcriptional regulator n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKY1_MOBAS
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:AIO33033.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_1837_curated_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16234..17025
DNA (792bp) protein (264aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
2-dehydro-3-deoxyglucarate aldolase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCU6_9RHIZ
2-dehydro-3-deoxyglucarate aldolase {ECO:0000313|EMBL:EKF18575.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_1837_curated_17
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17027..18052
DNA (1026bp) protein (342aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM94_THEM7
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU51453.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
SCNpilot_expt_1000_bf_scaffold_1837_curated_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18049..19071
DNA (1023bp) protein (341aa)
Peptide ABC transporter ATPase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCT9_9RHIZ
Peptide ABC transporter ATPase {ECO:0000313|EMBL:EKF18570.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
dppF1; oligopeptide/dipeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19548..19949
DNA (402bp) protein (134aa)
Binding-protein-dependent transporters inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MMU5_9RHIZ
Binding-protein-dependent transporters inner membrane component {ECO:0000313|EMBL:EKF18567.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19958..20863
DNA (906bp) protein (302aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8V9_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EKF18566.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1837_curated_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20914..21708
DNA (795bp) protein (265aa)
Creatininase; K01470 creatinine amidohydrolase [EC:3.5.2.10]
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LLB7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF18574.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Displaying 21 items

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