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SCNpilot_expt_1000_bf_scaffold_2667_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2667_curated_1
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1511
DNA (1509bp) protein (503aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Nitratireductor indicus C115 RepID=K2N9E6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2667_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1514..1723
DNA (210bp) protein (70aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Rhizobium mongolense RepID=UPI0003B722CE
SCNpilot_expt_1000_bf_scaffold_2667_curated_3
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1824..2666
DNA (843bp) protein (281aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KMM3_MESAW
methylase involved in ubiquinone/menaquinone biosynthesis
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AGB45328.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_2667_curated_4
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2656..3204)
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:CDN57153.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_2667_curated_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3302..4171)
DNA (870bp) protein (290aa)
Diguanylate cyclase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL89_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EHK58573.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_6
unknown

Not on your lists

4819..5013
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2667_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5112..5369)
DNA (258bp) protein (86aa)
30S ribosomal protein S21 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IVC3_POLGS
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2667_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5607..6158)
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ08_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59303.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6155..6898)
DNA (744bp) protein (248aa)
Phosphoadenylyl-sulfate reductase (thioredoxin) {ECO:0000256|SAAS:SAAS00089161}; EC=1.8.4.8 {ECO:0000256|SAAS:SAAS00089161};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
phosphoadenosine phosphosulfate reductase; K00390 phosphoadenosine phosphosulfate reductase [EC:1.8.4.8]
phosphoadenosine phosphosulfate reductase n=1 Tax=Hoeflea sp. 108 RepID=UPI000369B2EF
SCNpilot_expt_1000_bf_scaffold_2667_curated_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6888..8558)
DNA (1671bp) protein (557aa)
nitrite and sulfite reductase 4Fe-4S region; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
sulfite reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FE2638
Nitrite and sulfite reductase 4Fe-4S region {ECO:0000313|EMBL:EHK59305.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_2667_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8588..8899)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ11_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59306.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_12
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8896..10347)
DNA (1452bp) protein (484aa)
Uroporphyrinogen-III C-methyltransferase {ECO:0000313|EMBL:KFB08407.1}; EC=2.1.1.107 {ECO:0000313|EMBL:KFB08407.1};; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
uroporphyrinogen-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11B69_MESSB
SCNpilot_expt_1000_bf_scaffold_2667_curated_13
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10610..11056
DNA (447bp) protein (149aa)
Putative attachment protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P2F7_9RHIZ
Putative attachment protein {ECO:0000313|EMBL:KFB08408.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
Host attachment protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_14
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11075..11632)
DNA (558bp) protein (186aa)
Transcriptional regulator, LuxR family/sensory box protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO53195.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2667_curated_15
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11894..13093
DNA (1200bp) protein (400aa)
ABC transporter permease n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557982
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein {ECO:0000313|EMBL:EAQ14628.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_16
unknown

Not on your lists

comp(13212..13439)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2667_curated_17
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13698..13979
DNA (282bp) protein (94aa)
ABC transporter-like protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KRK1_9BURK
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM49226.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
branched chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_18
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14220..14678
DNA (459bp) protein (153aa)
ABC transporter related protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N9_9RHOB
ABC transporter related protein {ECO:0000313|EMBL:EAQ14630.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_19
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14707..15690
DNA (984bp) protein (328aa)
ABC-type transporter, permease component n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DUE1_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KAJ02525.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_20
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15687..16787
DNA (1101bp) protein (367aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U0P3_9RHOB
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EAQ02334.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
putative amino acid or sugar ABC transport system, permease protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_21
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16784..17635
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036FF096
Hydrolase {ECO:0000313|EMBL:KGY27732.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_2667_curated_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17632..19923)
DNA (2292bp) protein (764aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:CCV05315.1}; EC=2.4.1.129 {ECO:0000313|EMBL:CCV05315.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Penicillin-binding protein, 1A family n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMC3_9RHIZ
penicillin-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2667_curated_23
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20105..21175
DNA (1071bp) protein (357aa)
Acyltransferase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X2I6_9RHIZ
Acyltransferase {ECO:0000313|EMBL:ERI15019.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
acyltransferase 3
SCNpilot_expt_1000_bf_scaffold_2667_curated_24
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21185..21802)
DNA (618bp) protein (206aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5]
3''''-5'''' exonuclease n=1 Tax=Hoeflea sp. 108 RepID=UPI000379D3F4
3'-5' exonuclease {ECO:0000313|EMBL:ESW82674.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
SCNpilot_expt_1000_bf_scaffold_2667_curated_25
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21813..23204)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NYF4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF44290.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_26
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23792..26548
DNA (2757bp) protein (919aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I {ECO:0000313|EMBL:ABG65312.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABG65312.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
DNA polymerase I n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D24E6
SCNpilot_expt_1000_bf_scaffold_2667_curated_27
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26646..27818
DNA (1173bp) protein (391aa)
Peptidase C14 n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FAR6_9RHIZ
Peptidase C14 {ECO:0000313|EMBL:ESX64909.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
peptidase C14 caspase catalytic subunit p20
SCNpilot_expt_1000_bf_scaffold_2667_curated_28
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27854..28831
DNA (978bp) protein (326aa)
UPI0003CEB649 related cluster n=1 Tax=unknown RepID=UPI0003CEB649
Peptidase C14 {ECO:0000313|EMBL:ESW89862.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_29
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28860..29345
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FCY7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX64910.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2667_curated_30
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29342..29950
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037D7B49
Uncharacterized protein {ECO:0000313|EMBL:AID32540.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
Displaying items 1-30 of 43 in total

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