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SCNpilot_expt_1000_bf_scaffold_4394_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4394_curated_1
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1360
DNA (1359bp) protein (453aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
malate synthase G (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9]
Malate synthase G n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWN2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4394_curated_2
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1584..2267
DNA (684bp) protein (228aa)
UPI0003CF6AAB related cluster n=1 Tax=unknown RepID=UPI0003CF6AAB
Peptidase M22 {ECO:0000313|EMBL:ESX10791.1}; TaxID=1287322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
peptidase M22 glycoprotease
SCNpilot_expt_1000_bf_scaffold_4394_curated_3
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2267..2755
DNA (489bp) protein (163aa)
Peptide N-acetyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FH09_9RHIZ
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:CDX22945.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ribosomal-protein-alanine acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4394_curated_4
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2787..3632
DNA (846bp) protein (282aa)
hypothetical protein; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
UPI0003CDDBFF related cluster n=1 Tax=unknown RepID=UPI0003CDDBFF
Glycerol acyltransferase {ECO:0000313|EMBL:EZQ13154.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_4394_curated_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3643..5043
DNA (1401bp) protein (467aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C08
UPI0003D0192A related cluster n=1 Tax=unknown RepID=UPI0003D0192A
tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
SCNpilot_expt_1000_bf_scaffold_4394_curated_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5074..6114
DNA (1041bp) protein (347aa)
Phosphate starvation-induced protein phoH n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJY2_9RHIZ
Phosphate starvation-induced protein phoH {ECO:0000313|EMBL:EHK58953.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
phosphate starvation-inducible protein PhoH, predicted ATPase
SCNpilot_expt_1000_bf_scaffold_4394_curated_7
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6129..6641
DNA (513bp) protein (171aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E34A58
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_expt_1000_bf_scaffold_4394_curated_8
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7380..7745
DNA (366bp) protein (122aa)
UPI0003CF1A85 related cluster n=1 Tax=unknown RepID=UPI0003CF1A85
Uncharacterized protein {ECO:0000313|EMBL:ESY55826.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
transporter-associated region
SCNpilot_expt_1000_bf_scaffold_4394_curated_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7919..9586
DNA (1668bp) protein (556aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Apolipoprotein N-acyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEC2_9RHIZ
apolipoprotein N-acyltransferase
SCNpilot_expt_1000_bf_scaffold_4394_curated_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9717..10124
DNA (408bp) protein (136aa)
Transcriptional regulator n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZJ7_AGRVS
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ACM35309.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4394_curated_11
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10291..11598
DNA (1308bp) protein (436aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YBR7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4394_curated_12
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11615..12313
DNA (699bp) protein (233aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
UPI0003CF0AF2 related cluster n=1 Tax=unknown RepID=UPI0003CF0AF2
SCNpilot_expt_1000_bf_scaffold_4394_curated_13
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12409..13074
DNA (666bp) protein (222aa)
FAD/NAD(P)-binding oxidoreductase (EC:1.-.-.-); K00540 [EC:1.-.-.-]
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI000381FF5C
Flavodoxin reductase {ECO:0000313|EMBL:KGF69275.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_4394_curated_14
unknown

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comp(13523..13732)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4394_curated_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14017..14163
DNA (147bp) protein (49aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B53258
Bordetella uptake domain-containing protein {ECO:0000313|EMBL:AJD42794.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
bordetella uptake domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4394_curated_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14404..14631
DNA (228bp) protein (76aa)
Putative tricarboxylic transport membrane protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11D40_MESSB
putative tricarboxylic transport membrane protein; K07794 putative tricarboxylic transport membrane protein
Putative tricarboxylic transport membrane protein {ECO:0000313|EMBL:ABG64685.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_4394_curated_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14749..16266
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11D39_MESSB
Tripartite tricarboxylate transporter TctA {ECO:0000313|EMBL:KFL26970.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_4394_curated_18
unknown

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comp(16276..16440)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4394_curated_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16731..17381
DNA (651bp) protein (217aa)
UPI0003CE4B2E related cluster n=1 Tax=unknown RepID=UPI0003CE4B2E
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_4394_curated_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17432..19030
DNA (1599bp) protein (533aa)
NusA antitermination factor n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BD0_MESSB
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_4394_curated_21
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19082..19729
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLF5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX77837.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein; K07742 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4394_curated_22
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20318..20656
DNA (339bp) protein (113aa)
Translation initiation factor IF-2 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=IF2_MESSB
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
Displaying 22 items

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