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SCNpilot_expt_1000_bf_scaffold_3880_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3880_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12..326)
DNA (315bp) protein (105aa)
UPI0003CFA1FA related cluster n=1 Tax=unknown RepID=UPI0003CFA1FA
Cytochrome C {ECO:0000313|EMBL:ESZ18005.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
cytochrome C biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_expt_1000_bf_scaffold_3880_curated_2
unknown

Not on your lists

657..821
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3880_curated_3
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1292..1708
DNA (417bp) protein (139aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS64439.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
id=12553316 bin=BDI tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_3880_curated_4
unknown

Not on your lists

1733..1861
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3880_curated_5
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1934..2152
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS64437.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_expt_1000_bf_scaffold_3880_curated_6
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2435..2869)
DNA (435bp) protein (145aa)
cytochrome C biogenesis protein CcdA n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D453E
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
cytochrome c-type biogenesis protein CcmE
SCNpilot_expt_1000_bf_scaffold_3880_curated_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2904..3977)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000366D522
Cytochrome c-type biogenesis protein CycH {ECO:0000313|EMBL:CDX18834.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
cytochrome c-type biogenesis protein CcmI
SCNpilot_expt_1000_bf_scaffold_3880_curated_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4090..4554)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000369DC5E
Uncharacterized protein {ECO:0000313|EMBL:EZQ16830.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
surface antigen
SCNpilot_expt_1000_bf_scaffold_3880_curated_9
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4634..5602)
DNA (969bp) protein (323aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CF720A related cluster n=1 Tax=unknown RepID=UPI0003CF720A
ATPase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_10
unknown

Not on your lists

5707..6045
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3880_curated_11
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6018..6683)
DNA (666bp) protein (222aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KT41_MESAW
Putative Two-component transcriptional regulator {ECO:0000313|EMBL:CDX18828.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_3880_curated_12
Brucella abortus, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6733..7068)
DNA (336bp) protein (112aa)
Uncharacterized protein n=239 Tax=Brucella RepID=F2GSR1_BRUM5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ61053.1}; TaxID=520455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella abortus bv. 9 str. C68.;"
SCNpilot_expt_1000_bf_scaffold_3880_curated_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7105..7311)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MGE3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF19775.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_14
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7327..11028)
DNA (3702bp) protein (1234aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000313A69A
Host specificity protein {ECO:0000313|EMBL:EXL10061.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phage host specificity protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11038..11505)
DNA (468bp) protein (156aa)
peptidase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DDFC4A
Uncharacterized protein {ECO:0000313|EMBL:EKF40643.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11502..11792)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FC197F
Uncharacterized protein {ECO:0000313|EMBL:EXL10063.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_17
unknown

Not on your lists

12117..12302
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3880_curated_18
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12346..12996)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P030_9RHIZ
Glycoside hydrolase family 24 {ECO:0000313|EMBL:EXL10064.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_19
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13140..13703)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DCFB49
Tail protein {ECO:0000313|EMBL:EXL10065.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phage tail protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_20
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13705..13926)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NSB4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB82735.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_21
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13923..14261)
DNA (339bp) protein (113aa)
Gene transfer agent (GTA) like protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4Z5_STAND
Uncharacterized protein {ECO:0000313|EMBL:EXL10067.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
gene transfer agent (GTA) like protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14261..14674)
DNA (414bp) protein (138aa)
TP901-1 family phage major tail protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PHP4_9RHIZ
Tail protein {ECO:0000313|EMBL:EZQ16842.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
TP901-1 family phage major tail protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_23
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14767..15174)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000304ECE4
Uncharacterized protein {ECO:0000313|EMBL:EXL10069.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_24
unknown

Not on your lists

comp(15155..15343)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3880_curated_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15340..15675)
DNA (336bp) protein (112aa)
Phage head-tail adaptor n=1 Tax=Nitratireductor indicus C115 RepID=K2NMJ3_9RHIZ
Head-tail adaptor protein {ECO:0000313|EMBL:EXL10070.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phage head-tail adaptor
SCNpilot_expt_1000_bf_scaffold_3880_curated_26
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15672..16244)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031C5834
Uncharacterized protein {ECO:0000313|EMBL:EXL10071.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_27
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16355..17614)
DNA (1260bp) protein (420aa)
HK97 family major capsid protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N6J2_9RHIZ
Capsid protein {ECO:0000313|EMBL:EXL10072.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
HK97 family phage major capsid protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_28
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17616..18182)
DNA (567bp) protein (189aa)
HK97 family phage prohead protease n=1 Tax=Nitratireductor indicus C115 RepID=K2PHN9_9RHIZ
HK97 family phage prohead protease {ECO:0000313|EMBL:EKF40632.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
gp35; phage prohead protease; K06904
SCNpilot_expt_1000_bf_scaffold_3880_curated_29
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18194..18514)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030FD767
Uncharacterized protein {ECO:0000313|EMBL:EKF19780.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3880_curated_30
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18585..19289)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030103E1
Portal protein {ECO:0000313|EMBL:EXL10075.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phage portal protein, HK97 family
Displaying items 1-30 of 53 in total

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