ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5258_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5258_curated_1
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..400)
DNA (399bp) protein (133aa)
Cytochrome b n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT74_9RHIZ
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
cytochrome b/b6 domain; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
SCNpilot_expt_1000_bf_scaffold_5258_curated_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(415..978)
DNA (564bp) protein (188aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
fbcF; ubiquinol-cytochrome c reductase iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP72_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5258_curated_3
unknown

Not on your lists

comp(1228..1362)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5258_curated_4
unknown

Not on your lists

comp(1456..1752)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5258_curated_5
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1960..2283)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDE8_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH86744.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2288..4171)
DNA (1884bp) protein (628aa)
ABC transporter n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BY11_9RHIZ
ABC transporter {ECO:0000313|EMBL:EIM74463.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_5258_curated_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4280..4672)
DNA (393bp) protein (131aa)
Transcriptional regulator, XRE family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELL5_METSB
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACK50009.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5008..6864)
DNA (1857bp) protein (619aa)
ABC transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8E5_9RHIZ
ABC transporter {ECO:0000313|EMBL:EKF17220.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_5258_curated_9
unknown

Not on your lists

comp(6913..7101)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5258_curated_10
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7425..8288
DNA (864bp) protein (288aa)
Arylamine N-acetyltransferase (EC:2.3.1.5); K00675 N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
UPI0003CDFD6A related cluster n=1 Tax=unknown RepID=UPI0003CDFD6A
Acetyltransferase {ECO:0000313|EMBL:ESY68143.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8294..8749
DNA (456bp) protein (152aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
tRNA methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F25826
putative tRNA/rRNA methyltransferase
SCNpilot_expt_1000_bf_scaffold_5258_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8855..9187)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037DE011
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57450.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9225..10115
DNA (891bp) protein (297aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
coproporphyrinogen oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
coproporphyrinogen III oxidase n=1 Tax=Hoeflea sp. 108 RepID=UPI000377DEAC
SCNpilot_expt_1000_bf_scaffold_5258_curated_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10157..10420
DNA (264bp) protein (88aa)
Protein containing DUF497 n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SL12_RHOPH
Uncharacterized protein {ECO:0000313|EMBL:KJB93309.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein; K09803 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10410..10682
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GYM7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJB93308.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_16
unknown

Not on your lists

comp(10705..10887)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5258_curated_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10980..11906
DNA (927bp) protein (309aa)
LysR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MJ86_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF17217.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ampr1; HTH-type transcriptional activator ampR
SCNpilot_expt_1000_bf_scaffold_5258_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11992..12177
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP61_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57447.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_19
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12174..13454)
DNA (1281bp) protein (427aa)
polynucleotide adenylyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19]
poly(A) polymerase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031F3D25
Poly(A) polymerase {ECO:0000313|EMBL:ESZ18982.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_20
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13451..14089)
DNA (639bp) protein (213aa)
NUDIX hydrolase n=1 Tax=Nitratireductor indicus C115 RepID=K2P8U9_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EKF43611.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_5258_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14086..14226)
DNA (141bp) protein (47aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000362EAE2
Uncharacterized protein {ECO:0000313|EMBL:EGP56358.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein; K09986 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14790..15896
DNA (1107bp) protein (369aa)
regulatory protein; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase associated with various cellular activities AAA_3 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EY37_9RHIZ
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:CCV08850.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_23
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15989..16717
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GA3_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG63572.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_5258_curated_24
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16764..18884
DNA (2121bp) protein (707aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EXH4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV08852.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
N-terminal double-transmembrane domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18915..19502
DNA (588bp) protein (196aa)
Conserved hypothetical membrane protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GA2_MESSB
RNA-binding protein {ECO:0000313|EMBL:EXL04430.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_26
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19445..19576
DNA (132bp) protein (44aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAT9_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11263.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5258_curated_27
unknown

Not on your lists

19830..19913
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 27 items

View Taxonomy