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SCNpilot_expt_1000_bf_scaffold_4143_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4143_curated_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..402
DNA (402bp) protein (134aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
porphobilinogen deaminase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003611284
SCNpilot_expt_1000_bf_scaffold_4143_curated_2
unknown

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comp(386..655)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4143_curated_3
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1186..2628
DNA (1443bp) protein (481aa)
UPI0003CF2C95 related cluster n=1 Tax=unknown RepID=UPI0003CF2C95
Tail protein {ECO:0000313|EMBL:ESY18031.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
phage tail protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2638..4338
DNA (1701bp) protein (567aa)
HemY domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLE8_9RHIZ
HemY domain-containing protein {ECO:0000313|EMBL:EHK58477.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
HemY-like; K02498 HemY protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_5
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4417..4872
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000304919A
Uncharacterized protein {ECO:0000313|EMBL:ESX67267.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4891..6132)
DNA (1242bp) protein (414aa)
Major facilitator superfamily protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLE5_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:EHK58474.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_7
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6249..6557)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FDCD5B
Uncharacterized protein {ECO:0000313|EMBL:ESY31932.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_8
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6693..8078
DNA (1386bp) protein (462aa)
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1]
reductase n=1 Tax=Pseudomonas fluorescens RepID=UPI0003075A0C
Uncharacterized protein {ECO:0000313|EMBL:KGJ08962.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_expt_1000_bf_scaffold_4143_curated_9
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8556..8795
DNA (240bp) protein (80aa)
Short-chain dehydrogenase n=1 Tax=Burkholderia sp. YI23 RepID=G8MMN9_9BURK
Short-chain dehydrogenase {ECO:0000313|EMBL:BAO91903.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
short-chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_4143_curated_10
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8871..9404
DNA (534bp) protein (178aa)
UPI0003D05453 related cluster n=1 Tax=unknown RepID=UPI0003D05453
Membrane protein {ECO:0000313|EMBL:ESZ23518.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
putative small integral membrane protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_11
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9388..9981)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMT5_RHITR
Putative secreted Zn-dependent protease {ECO:0000313|EMBL:AKI01147.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4143_curated_12
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10675..13824
DNA (3150bp) protein (1050aa)
helicase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037B46E0
Helicase {ECO:0000313|EMBL:ESY79641.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
DNA/RNA helicase, superfamily II
SCNpilot_expt_1000_bf_scaffold_4143_curated_13

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13837..14163
DNA (327bp) protein (109aa)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=1 Tax=uncultured bacterium HF130_12L15 RepID=E0XPP9_9BACT
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:ADI16390.1}; TaxID=710815 species="Bacteria; environmental samples.;" source="uncultured bacterium HF130_12L15.;"
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
SCNpilot_expt_1000_bf_scaffold_4143_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14308..14646
DNA (339bp) protein (113aa)
Ferredoxin II n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLV0_9RHIZ
Ferredoxin II {ECO:0000313|EMBL:EHK58278.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
4Fe-4S ferredoxin; K05524 ferredoxin
SCNpilot_expt_1000_bf_scaffold_4143_curated_15
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14999..15571
DNA (573bp) protein (191aa)
CarD family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4G4_9RHIZ
CarD family transcriptional regulator {ECO:0000313|EMBL:EIM76716.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4143_curated_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15645..16157)
DNA (513bp) protein (171aa)
Transcriptional regulator, HxlR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11G89_MESSB
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ABG63586.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_4143_curated_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16296..16853
DNA (558bp) protein (186aa)
Bifunctional deaminase-reductase-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11G87_MESSB
bifunctional deaminase/reductase-like protein
Bifunctional deaminase-reductase-like protein {ECO:0000313|EMBL:ABG63588.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying 17 items

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