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SCNpilot_expt_1000_bf_scaffold_4838_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4838_curated_1
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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127..840
DNA (714bp) protein (238aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source
lipoate-protein ligase B (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Lipoate-protein ligase B n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HI34_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4838_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1172..1870)
DNA (699bp) protein (233aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D72744
ABC transporter
SCNpilot_expt_1000_bf_scaffold_4838_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1867..3093)
DNA (1227bp) protein (409aa)
multidrug ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FEAF38
Lipoprotein releasing system, transmembrane protein, LolC/E family {ECO:0000313|EMBL:EHK56638.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_1000_bf_scaffold_4838_curated_4
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3177..3818)
DNA (642bp) protein (214aa)
Proline--tRNA ligase {ECO:0000256|SAAS:SAAS00089874}; EC=6.1.1.15 {ECO:0000256|SAAS:SAAS00089874};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
prolyl-tRNA synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003815A82
SCNpilot_expt_1000_bf_scaffold_4838_curated_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5101..5373)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MDE8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF20191.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4838_curated_6
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5427..5831)
DNA (405bp) protein (135aa)
hypothetical protein; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
UPI0003CF535F related cluster n=1 Tax=unknown RepID=UPI0003CF535F
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ESW80951.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
SCNpilot_expt_1000_bf_scaffold_4838_curated_7
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5953..7623)
DNA (1671bp) protein (557aa)
beta-lactamase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003702754
beta-lactamase-like protein; K07021
Beta-lactamase-like protein {ECO:0000313|EMBL:ABG62434.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_4838_curated_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7633..8460)
DNA (828bp) protein (276aa)
Biotin--(Acetyl-CoA-carboxylase) synthetase {ECO:0000313|EMBL:CCV14579.1}; EC=6.3.4.15 {ECO:0000313|EMBL:CCV14579.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
biotin/acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--(Acetyl-CoA-carboxylase) synthetase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FLJ4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4838_curated_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8464..9900)
DNA (1437bp) protein (479aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
NADH dehydrogenase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit N n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F5BB6
SCNpilot_expt_1000_bf_scaffold_4838_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9910..10155)
DNA (246bp) protein (82aa)
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:EKF20196.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EKF20196.1};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
nuoM; NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) (EC:1.6.99.5 1.6.5.3)
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MDF1_9RHIZ
Displaying 10 items

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