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SCNpilot_cont_300_bf_scaffold_384_curated

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_384_curated_1
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22..669)
DNA (648bp) protein (216aa)
Putative short-chain dehydrogenase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PRZ1_9RHIZ
Putative short-chain dehydrogenase {ECO:0000313|EMBL:CCM79501.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
short-chain dehydrogenase/reductase sdr; K07124
SCNpilot_cont_300_bf_scaffold_384_curated_2
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(784..1767)
DNA (984bp) protein (328aa)
Putative oxidoreductase, Zn-dependent and NAD(P)-binding n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q3P1_9RHIZ
Putative oxidoreductase, Zn-dependent and NAD(P)-binding {ECO:0000313|EMBL:CCM79500.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
zinc-binding alcohol dehydrogenase
SCNpilot_cont_300_bf_scaffold_384_curated_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1942..2283
DNA (342bp) protein (114aa)
Uncharacterized HTH-type transcriptional regulator ydeP n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q6A1_9RHIZ
Uncharacterized HTH-type transcriptional regulator ydeP {ECO:0000313|EMBL:CCM79499.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_384_curated_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2410..3084)
DNA (675bp) protein (225aa)
Transcriptional regulator TetR family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P8_AGRVS
TetR family transcriptional regulator
Transcriptional regulator TetR family {ECO:0000313|EMBL:ACM40196.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_384_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3468..4661
DNA (1194bp) protein (398aa)
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P7_AGRVS
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAJ97090.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter ATPase; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_384_curated_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4645..5565
DNA (921bp) protein (307aa)
ABC transporter n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P6_AGRVS
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAJ97089.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter; K02025 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_384_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5565..6392
DNA (828bp) protein (276aa)
ABC transporter membrane spanning protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P5_AGRVS
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAJ97088.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_384_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6463..7734
DNA (1272bp) protein (424aa)
ABC transporter substrate binding protein (Sugar) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P4_AGRVS
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ97087.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
ABC transporter substrate binding protein (sugar); K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_384_curated_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7859..8689
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P3_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:GAJ97086.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_384_curated_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8825..9700
DNA (876bp) protein (292aa)
hypothetical protein; K04486 histidinol-phosphatase (PHP family) [EC:3.1.3.15]
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5P2_AGRVS
Histidinol-phosphate phosphatase family protein {ECO:0000313|EMBL:GAJ97085.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_300_bf_scaffold_384_curated_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9703..10239
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037884F8
Putative acetyltransferase {ECO:0000313|EMBL:GAJ97084.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
acetyltransferase
SCNpilot_cont_300_bf_scaffold_384_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11263..12522
DNA (1260bp) protein (420aa)
Reverse transcriptase/maturase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJR5_AGRRK
reverse transcriptase/maturase
Reverse transcriptase/maturase protein {ECO:0000313|EMBL:ACM30157.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_300_bf_scaffold_384_curated_13
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12555..13049
DNA (495bp) protein (165aa)
Transposase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D7K7_9RHIZ
Transposase {ECO:0000313|EMBL:EDQ33097.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
transposase; K07498 putative transposase
SCNpilot_cont_300_bf_scaffold_384_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13389..14783)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
two component sensor kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003635C30
SCNpilot_cont_300_bf_scaffold_384_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14780..15442)
DNA (663bp) protein (221aa)
transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003675A47
DNA-binding response regulator {ECO:0000313|EMBL:AHK04468.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
two component response regulator
SCNpilot_cont_300_bf_scaffold_384_curated_16
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15573..16088
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LDQ4_AGRSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY65866.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_300_bf_scaffold_384_curated_17
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16445..17578
DNA (1134bp) protein (378aa)
Putative RND efflux transporter, MFP subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR42_RHITR
Multidrug resistance protein MdtA {ECO:0000313|EMBL:GAK72116.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
putative RND efflux transporter, MFP subunit
SCNpilot_cont_300_bf_scaffold_384_curated_18
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17575..20730
DNA (3156bp) protein (1052aa)
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSS5_RHITR
Multidrug resistance protein MdtB {ECO:0000313|EMBL:GAK72115.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
resistance nodulation cell division (RND) drug efflux pump, inner membrane component
SCNpilot_cont_300_bf_scaffold_384_curated_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20787..22043
DNA (1257bp) protein (419aa)
Arsenical pump membrane protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UDB3_9RHIZ
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
arsB; arsenical efflux pump protein ArsB
SCNpilot_cont_300_bf_scaffold_384_curated_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22372..23574)
DNA (1203bp) protein (401aa)
GGDEF domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVV0_RHITR
GGDEF domain-containing protein
GGDEF domain-containing protein {ECO:0000313|EMBL:AGB75367.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_384_curated_21
unknown

Not on your lists

comp(24263..24478)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_384_curated_22
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24594..24983)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DIN2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT01549.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein; K06893
SCNpilot_cont_300_bf_scaffold_384_curated_23
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25089..25691)
DNA (603bp) protein (201aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5M9W6_9RHIZ
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:EJT01550.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
NADP oxidoreductase coenzyme F420-dependent; K06988
SCNpilot_cont_300_bf_scaffold_384_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25723..26475)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KGZ5_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC76474.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
glucose dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_384_curated_25
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26526..27260)
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DFI8_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJT01551.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
glucose dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_384_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27486..28382
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WGN9_RHILT
Transcriptional regulator {ECO:0000313|EMBL:EJC84598.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_384_curated_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28720..30507)
DNA (1788bp) protein (596aa)
methyl-accepting chemotaxis protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000368A12A
PAS domain S-box {ECO:0000313|EMBL:EJC63931.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
mcpA; putative methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_cont_300_bf_scaffold_384_curated_28
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31216..32193)
DNA (978bp) protein (326aa)
Exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
Exonuclease RNase T and DNA polymerase III n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BXR0_SINMB
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:AEG06790.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_cont_300_bf_scaffold_384_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32533..32751)
DNA (219bp) protein (73aa)
Transcriptional regulator, XRE family n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JB49_AGRRK
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACM28541.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_300_bf_scaffold_384_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32934..33287
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPP6_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM31115.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Displaying items 1-30 of 54 in total

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