ggKbase home page

SCNpilot_cont_300_bf_scaffold_144_curated

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_144_curated_1
unknown

Not on your lists

comp(2..88)
DNA (87bp) protein (29aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_144_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139..972)
DNA (834bp) protein (278aa)
Xylose isomerase-like protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXG7_RHITR
xylose isomerase-like protein
Xylose isomerase-like protein {ECO:0000313|EMBL:AGB74854.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1203..2132
DNA (930bp) protein (310aa)
D-galactose-binding periplasmic protein precursor, putative (EC:3.6.3.17)
Rhizopine-binding protein MocB n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TZ42_9RHIZ
Rhizopine-binding protein MocB {ECO:0000313|EMBL:ENN85679.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_300_bf_scaffold_144_curated_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2328..3362
DNA (1035bp) protein (345aa)
Sterol desaturase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U5X3_9RHIZ
Sterol desaturase {ECO:0000313|EMBL:ENN85678.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
fatty acid hydroxylase
SCNpilot_cont_300_bf_scaffold_144_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3543..4580)
DNA (1038bp) protein (346aa)
Putative LacI family transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3P6_9RHIZ
Putative LacI family transcriptional regulator {ECO:0000313|EMBL:ENN85677.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator protein; K02529 LacI family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_144_curated_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4759..5076
DNA (318bp) protein (106aa)
Putative Rieske-like ferredoxin MocE n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UY36_9RHIZ
Putative Rieske-like ferredoxin MocE {ECO:0000313|EMBL:ENN85676.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Rieske (2Fe-2S) domain-containing protein, MocE subfamily
SCNpilot_cont_300_bf_scaffold_144_curated_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5073..6311
DNA (1239bp) protein (413aa)
Putative ferredoxin reductase MocF n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UVI0_9RHIZ
Putative ferredoxin reductase MocF {ECO:0000313|EMBL:ENN85675.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
rhodocoxin reductase
SCNpilot_cont_300_bf_scaffold_144_curated_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6554..6787
DNA (234bp) protein (78aa)
hypothetical protein; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3B095_9RHIZ
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:EUB97836.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_cont_300_bf_scaffold_144_curated_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6813..7190
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SSU5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ28338.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_144_curated_10
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7200..8183
DNA (984bp) protein (328aa)
Aldo/keto reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZE8_LEPCP
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACB36511.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_cont_300_bf_scaffold_144_curated_11
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8200..8853)
DNA (654bp) protein (218aa)
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED n=1 Tax=Rhizobium sp. AP16 RepID=J2KUV5_9RHIZ
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:EJK78921.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hydrolase
SCNpilot_cont_300_bf_scaffold_144_curated_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8853..9773)
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXK3_RHITR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGB74850.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10001..10942
DNA (942bp) protein (314aa)
Tagatose-1,6-bisphosphate aldolase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXG2_RHITR
tagatose-1,6-bisphosphate aldolase
Tagatose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:AGB74849.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10908..12347
DNA (1440bp) protein (480aa)
Putative glucokinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU77_RHITR
putative glucokinase
Putative glucokinase {ECO:0000313|EMBL:AGB74848.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12575..13564
DNA (990bp) protein (330aa)
Putative amino acid ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUD5_RHITR
putative amino acid ABC transporter, substrate-binding protein
Putative amino acid ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB74847.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13673..14737
DNA (1065bp) protein (355aa)
Putative amino acid ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVW1_RHITR
putative amino acid ABC transporter, permease protein
Putative amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGB74846.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14730..15476
DNA (747bp) protein (249aa)
Putative amino acid ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXJ9_RHITR
putative amino acid ABC transporter, ATP-binding protein
Putative amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB74845.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15824..16675
DNA (852bp) protein (284aa)
MaoC-like dehydratase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JID7_AGRRK
MaoC-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:ACM29679.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_300_bf_scaffold_144_curated_19
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16672..17436
DNA (765bp) protein (255aa)
Histidine utilization repressor n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JID6_AGRRK
hutC; histidine utilization repressor; K05836 GntR family transcriptional regulator, histidine utilization repressor
Histidine utilization repressor {ECO:0000313|EMBL:EJK81545.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_300_bf_scaffold_144_curated_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17433..18947
DNA (1515bp) protein (505aa)
Phenylalanine and histidine ammonia-lyase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXF7_RHITR
phenylalanine and histidine ammonia-lyase
Phenylalanine and histidine ammonia-lyase {ECO:0000313|EMBL:AGB74844.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19064..20068
DNA (1005bp) protein (335aa)
Ornithine cyclodeaminase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4S0_9RHIZ
ornithine cyclodeaminase/mu-crystallin
Ornithine cyclodeaminase {ECO:0000313|EMBL:ENN88101.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_300_bf_scaffold_144_curated_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20075..20884
DNA (810bp) protein (270aa)
ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUD0_RHITR
ABC transporter, substrate-binding protein
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB74842.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20945..21526)
DNA (582bp) protein (194aa)
Nucleoside 2-deoxyribosyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVV4_RHITR
nucleoside 2-deoxyribosyltransferase
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:AGB74841.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21749..22996
DNA (1248bp) protein (416aa)
Adenylate cyclase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXJ3_RHITR
adenylate cyclase protein
Adenylate cyclase protein {ECO:0000313|EMBL:AGB74840.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23248..23772
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXF3_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74839.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23961..25193
DNA (1233bp) protein (411aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Peptidase T n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU66_RHITR
pepT; peptidase T
SCNpilot_cont_300_bf_scaffold_144_curated_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25469..26251
DNA (783bp) protein (261aa)
Glycine-rich protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUC5_RHITR
glycine-rich protein
Glycine-rich protein {ECO:0000313|EMBL:AGB74837.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_28
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26350..26991)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVU9_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74836.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_29
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27811..28308
DNA (498bp) protein (166aa)
Sigma-fimbriae tip adhesin n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXE8_RHITR
sigma-fimbriae tip adhesin
Sigma-fimbriae tip adhesin {ECO:0000313|EMBL:AGB74834.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_144_curated_30
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28334..29053
DNA (720bp) protein (240aa)
Sigma-fimbriae chaperone protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU60_RHITR
sigma-fimbriae chaperone protein
Sigma-fimbriae chaperone protein {ECO:0000313|EMBL:AGB74833.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying items 1-30 of 140 in total

View Taxonomy