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SCNpilot_cont_300_bf_scaffold_785_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_785_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..293)
DNA (291bp) protein (97aa)
10 kDa chaperonin n=2 Tax=Rhizobium leguminosarum RepID=Q9L692_RHILE
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=384 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum.;"
groESf; 10 kDa chaperonin, heat shock protein; K04078 chaperonin GroES
SCNpilot_cont_300_bf_scaffold_785_curated_2
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

571..843
DNA (273bp) protein (91aa)
Usg-like protein n=2 Tax=Rhizobium etli RepID=S5RT78_RHIET
Usg-like protein
Phosphoribosylanthranilate isomerase subunit {ECO:0000313|EMBL:EEQ94605.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
SCNpilot_cont_300_bf_scaffold_785_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

937..1227
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI000373C2CD
Uncharacterized protein {ECO:0000313|EMBL:EPR23338.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_785_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1394..1867
DNA (474bp) protein (158aa)
molecular chaperone Hsp20 n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D5094
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:EJC64626.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
small heat shock protein; K04080 molecular chaperone IbpA
SCNpilot_cont_300_bf_scaffold_785_curated_5
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1943..2242
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q8U5X5_AGRT5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK90428.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_cont_300_bf_scaffold_785_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2250..2417
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000373B4C3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS60450.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_300_bf_scaffold_785_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2859..3107
DNA (249bp) protein (83aa)
sensory transduction histidine kinase (EC:2.7.3.-)
Sensory transduction histidine kinase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LGD5_AGRSH
Sensory transduction histidine kinase {ECO:0000313|EMBL:EHJ96536.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_cont_300_bf_scaffold_785_curated_8
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3135..3629
DNA (495bp) protein (165aa)
sensory transduction histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037EA5BB
Sensory transduction histidine kinase {ECO:0000313|EMBL:ADY68117.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_300_bf_scaffold_785_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3734..4099)
DNA (366bp) protein (122aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H9N0_RHILT
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:EJB07115.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_785_curated_10
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4434..4601
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM61157.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCNpilot_cont_300_bf_scaffold_785_curated_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4937..5395)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000372784E
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AGB75500.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_785_curated_12
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5475..6191)
DNA (717bp) protein (239aa)
short-chain dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000372F404
short-chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFT89984.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
SCNpilot_cont_300_bf_scaffold_785_curated_13
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6257..6631)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036752E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHL14098.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
SCNpilot_cont_300_bf_scaffold_785_curated_14
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6653..7537)
DNA (885bp) protein (295aa)
NmrA family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036756A9
NmrA family protein
NmrA family protein {ECO:0000313|EMBL:ACB95455.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_785_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8825..9436)
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB195
TetR family transcriptional regulator {ECO:0000313|EMBL:KIZ43231.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transcriptional regulator, TetR family
SCNpilot_cont_300_bf_scaffold_785_curated_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9552..10526
DNA (975bp) protein (325aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB196
ABC transporter subfamily C PrsD {ECO:0000313|EMBL:ERF84753.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_785_curated_17
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10617..11363
DNA (747bp) protein (249aa)
3-oxoacyl-[acyl-carrier protein] reductase FabG {ECO:0000313|EMBL:AJK49918.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AJK49918.1};; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB198
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_785_curated_18
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11377..11865
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCAE3
Uncharacterized protein {ECO:0000313|EMBL:AJK49917.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_785_curated_19
unknown

Not on your lists

11963..12151
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_785_curated_20
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12851..13759)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XND2_9PROT
LysR family transcriptional regulator {ECO:0000313|EMBL:EKM98189.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hcaR; transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_785_curated_21
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13934..14680
DNA (747bp) protein (249aa)
Putative short-chain dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZEY7_9PROT
Putative short-chain dehydrogenase {ECO:0000313|EMBL:EKM98190.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
putative short-chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_785_curated_22
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14707..15543
DNA (837bp) protein (279aa)
Tyrosyl-tRNA synthetase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IPW3_9BRAD
Tyrosyl-tRNA synthetase {ECO:0000313|EMBL:ERF84789.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_785_curated_23
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15625..16371
DNA (747bp) protein (249aa)
Oxidoreductase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YTK2_9PROT
Oxidoreductase {ECO:0000313|EMBL:EKM98192.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_785_curated_24
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16397..16777
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YSX9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM98193.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_785_curated_25
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16804..17550
DNA (747bp) protein (249aa)
putative short-chain dehydrogenase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Putative short-chain dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XND6_9PROT
Putative short-chain dehydrogenase {ECO:0000313|EMBL:EKM98194.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
SCNpilot_cont_300_bf_scaffold_785_curated_26
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17850..18191)
DNA (342bp) protein (114aa)
UPI0003CED260 related cluster n=1 Tax=unknown RepID=UPI0003CED260
Uncharacterized protein {ECO:0000313|EMBL:ESY73776.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_785_curated_27
Sphingomonas sp. JE1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18205..18948)
DNA (744bp) protein (248aa)
UPI0003CE889E related cluster n=1 Tax=unknown RepID=UPI0003CE889E
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AJW29566.1}; TaxID=1628059 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. JE1.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_785_curated_28
Sphingomonas sp. JE1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19081..19953
DNA (873bp) protein (291aa)
UPI0003CF2812 related cluster n=1 Tax=unknown RepID=UPI0003CF2812
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AJW29567.1}; TaxID=1628059 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. JE1.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_785_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21363..21578
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UVL4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84801.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_300_bf_scaffold_785_curated_30
unknown

Not on your lists

21604..21762
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

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