ggKbase home page

SCNpilot_cont_300_bf_scaffold_902_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_902_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..126
DNA (126bp) protein (42aa)
TonB-dependent siderophore receptor n=1 Tax=Rhizobium sp. AP16 RepID=J2CS93_9RHIZ
fhuA; ferrichrome-iron transporter; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJK79929.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_300_bf_scaffold_902_curated_2
unknown

Not on your lists

comp(378..539)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_902_curated_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(536..2527)
DNA (1992bp) protein (664aa)
FhuB-like siderophore ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUG5_RHITR
FhuB-like siderophore ABC transporter, permease protein
FhuB-like siderophore ABC transporter, permease protein {ECO:0000313|EMBL:AGB74933.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2524..3339)
DNA (816bp) protein (272aa)
FhuD-like siderophore ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUM2_RHITR
FhuD-like siderophore ABC transporter, substrate-binding protein
FhuD-like siderophore ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB74932.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3419..4231)
DNA (813bp) protein (271aa)
FhuC-like siderophore ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW43_RHITR
FhuC-like siderophore ABC transporter, ATP-binding protein
FhuC-like siderophore ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB74931.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4292..4765)
DNA (474bp) protein (158aa)
Siderophore acetylase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXS6_RHITR
siderophore acetylase protein
Siderophore acetylase protein {ECO:0000313|EMBL:AGB74930.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4816..5409)
DNA (594bp) protein (198aa)
RNA polymerase sigma factor, ECF subfamily n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXP0_RHITR
RNA polymerase sigma factor, ECF subfamily
RNA polymerase sigma factor, ECF subfamily {ECO:0000313|EMBL:AGB74929.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5574..6293)
DNA (720bp) protein (240aa)
4'-phosphopantetheinyl transferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUG0_RHITR
4'-phosphopantetheinyl transferase
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:AGB74928.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6295..7614)
DNA (1320bp) protein (440aa)
L-lysine 6-monooxygenase (Lysine 6-N-hydroxylase)(Lysine N(6)-hydroxylase) (Lysine-N-oxygenase) n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUL6_RHITR
L-lysine 6-monooxygenase (Lysine 6-N-hydroxylase)(Lysine N(6)-hydroxylase) (Lysine-N-oxygenase)
L-lysine 6-monooxygenase (Lysine 6-N-hydroxylase)(Lysine N(6)-hydroxylase) (Lysine-N-oxygenase) {ECO:0000313|EMBL:AGB74927.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7647..11624)
DNA (3978bp) protein (1326aa)
Siderophore biosynthesis non-ribosomal peptide synthase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW40_RHITR
Siderophore biosynthesis non-ribosomal peptide synthase protein {ECO:0000313|EMBL:AGB74926.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
siderophore biosynthesis non-ribosomal peptide synthase protein
SCNpilot_cont_300_bf_scaffold_902_curated_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11952..13103
DNA (1152bp) protein (384aa)
N6-hydroxylysine O-acetyltransferase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXS2_RHITR
N6-hydroxylysine O-acetyltransferase protein
N6-hydroxylysine O-acetyltransferase protein {ECO:0000313|EMBL:AGB74925.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13103..14473
DNA (1371bp) protein (457aa)
Multidrug and toxin extrusion (MATE) family efflux pump n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXN6_RHITR
multidrug and toxin extrusion (MATE) family efflux pump
Multidrug and toxin extrusion (MATE) family efflux pump {ECO:0000313|EMBL:AGB74924.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14489..15670
DNA (1182bp) protein (394aa)
Methionine gamma-lyase (L-methioninase) n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUF5_RHITR
methionine gamma-lyase (L-methioninase)
Methionine gamma-lyase (L-methioninase) {ECO:0000313|EMBL:AGB74923.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15777..17027
DNA (1251bp) protein (417aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Diaminopimelate decarboxylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUL1_RHITR
diaminopimelate decarboxylase
SCNpilot_cont_300_bf_scaffold_902_curated_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17127..18599
DNA (1473bp) protein (491aa)
Cytochrome P450 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXY1_9RHIZ
Cytochrome P450 {ECO:0000313|EMBL:ENN85611.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
cytochrome P450
SCNpilot_cont_300_bf_scaffold_902_curated_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18602..19597
DNA (996bp) protein (332aa)
Putative lauroyl/myristoyl acyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXR8_RHITR
putative lauroyl/myristoyl acyltransferase
Putative lauroyl/myristoyl acyltransferase {ECO:0000313|EMBL:AGB74920.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_902_curated_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19900..20967
DNA (1068bp) protein (356aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS76_RHITR
rfbB; dTDP-glucose 4,6-dehydratase
SCNpilot_cont_300_bf_scaffold_902_curated_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20964..21242
DNA (279bp) protein (93aa)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNR9_RHITR
rfbD; dTDP-4-dehydrorhamnose reductase
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AGB73023.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 18 items

View Taxonomy