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SCNpilot_expt_1000_bf_scaffold_1297_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1297_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..563
DNA (561bp) protein (187aa)
Putative periplasmic protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WHH0_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM26915.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(574..927)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000360E5CF
Uncharacterized protein {ECO:0000313|EMBL:EYR77796.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_3
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1003..2730)
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JX74_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM36852.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2934..3950
DNA (1017bp) protein (339aa)
Glycosyltransferase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JX72_AGRVS
glycosyltransferase
Glycosyltransferase protein {ECO:0000313|EMBL:ACM36850.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_5
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3985..4998)
DNA (1014bp) protein (338aa)
metH; methionine synthase I; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
methionine synthase n=1 Tax=Rhizobium giardinii RepID=UPI00036916C3
Cobalamin-dependent methionine synthase I {ECO:0000313|EMBL:EJK82122.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5139..6185)
DNA (1047bp) protein (349aa)
putative ABC transporter ATP-binding protein; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/L-proline ABC transporter, ATPase subunit n=8 Tax=Rhizobium meliloti RepID=F6BPB8_SINMB
Putative ABC-transporter ATP-binding protein {ECO:0000313|EMBL:AGG74553.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6178..7086)
DNA (909bp) protein (303aa)
ABC-type proline/glycine betaine transport system, permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2WHG5_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KDP76339.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
QAT familiy ABC transporter, permease protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7331..8326)
DNA (996bp) protein (332aa)
ABC-type glycine betaine transport, periplasmic subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBP0_9RHIZ
ABC-type glycine betaine transport, periplasmic subunit {ECO:0000313|EMBL:EHS49780.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
QAT familiy ABC transporter, periplasmic substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9166..9309)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LN59_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB71510.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9679..11022
DNA (1344bp) protein (448aa)
Cobyric acid synthase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XA70_RHIFR
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
cobQ; cobyric acid synthase CobQ
SCNpilot_expt_1000_bf_scaffold_1297_curated_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11680..12207
DNA (528bp) protein (176aa)
Bifunctional adenosylcobalamin biosynthesis protein CobP n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJU3_RHITR
cobP; bifunctional adenosylcobalamin biosynthesis protein CobP
Bifunctional adenosylcobalamin biosynthesis protein CobP {ECO:0000313|EMBL:AGB71507.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12212..13261
DNA (1050bp) protein (350aa)
Cobalamin biosynthesis protein CobW n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JGD0_AGRRK
cobW; cobalamin biosynthesis protein CobW; K02234 cobalamin biosynthesis protein CobW
Cobalamin biosynthesis protein CobW {ECO:0000313|EMBL:KEA06503.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_13
unknown

Not on your lists

comp(13200..14345)
DNA (1146bp) protein (382aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1297_curated_14
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14652..15974)
DNA (1323bp) protein (441aa)
DNA-binding response regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TDG2_9BURK
DNA-binding response regulator, LuxR family {ECO:0000313|EMBL:EDT38400.1}; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_15
unknown

Not on your lists

comp(16173..16868)
DNA (696bp) protein (232aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1297_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17407..17742
DNA (336bp) protein (112aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17); K00798 cob(I)alamin adenosyltransferase [EC:2.5.1.17]
Cob(I)alamin adenosyltransferase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KH65_RHILT
Cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:EJC76559.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17742..18167
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Ensifer adhaerens RepID=I0FXH6_ENSAD
Uncharacterized protein {ECO:0000313|EMBL:BAL73213.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein; K08978 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_18
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18164..18532)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5R6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS51909.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_1297_curated_19
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19034..19462
DNA (429bp) protein (143aa)
cobE; precorrin-3B C17-methyltransferase (EC:2.1.1.131); K05934 precorrin-3B C17-methyltransferase [EC:2.1.1.131]
Precorrin-3B C17-methyltransferase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TCF6_9RHIZ
Precorrin-3B C17-methyltransferase {ECO:0000313|EMBL:EJT05622.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_20
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19589..20548
DNA (960bp) protein (320aa)
iunH; inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.-)
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A9P0_RHIRD
Nucleoside hydrolase {ECO:0000313|EMBL:KJF65167.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20789..21631
DNA (843bp) protein (281aa)
cobA; uroporphyrin-III C-methyltransferase; K02303 uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
Uroporphyrin-III C-methyltransferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JGC1_AGRRK
Uroporphyrin-III methyltransferase {ECO:0000313|EMBL:KEA06511.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21628..22935
DNA (1308bp) protein (436aa)
Hydrogenobyrinate a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; EC=6.3.5.9 {ECO:0000256|HAMAP-Rule:MF_00027};; Hydrogenobyrinic acid a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
cobB; cobyrinic acid a,c-diamide synthase (EC:6.3.5.9); K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
Cobyrinic acid A,C-diamide synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VUP0_RHILT
SCNpilot_expt_1000_bf_scaffold_1297_curated_23
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22932..24899
DNA (1968bp) protein (656aa)
cobD; cobalamin biosynthesis protein (EC:6.3.1.10); K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
Cobalamin biosynthesis protein CobD n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HHF0_9RHIZ
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_24
Yersinia aldovae, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25098..26552
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000365556C
Anthrax toxin LF subunit {ECO:0000313|EMBL:AJJ62231.1}; TaxID=1453495 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia aldovae 670-83.;"
anthrax toxin LF subunit
SCNpilot_expt_1000_bf_scaffold_1297_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26816..27244
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0C9D3_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC79672.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
L,D-transpeptidase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27288..27548)
DNA (261bp) protein (87aa)
Transcriptional regulator, Crp family n=2 Tax=Agrobacterium RepID=F0L594_AGRSH
fnrL; Crp family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Transcriptional regulator, Crp family protein {ECO:0000313|EMBL:EHJ97498.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_expt_1000_bf_scaffold_1297_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27532..27984)
DNA (453bp) protein (151aa)
Putative transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPC1_9RHIZ
Putative transcriptional activator {ECO:0000313|EMBL:EYR80643.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator protein, Fnr/CRP family; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_28
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28156..29505
DNA (1350bp) protein (450aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hemN; coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen-III oxidase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QWL5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1297_curated_29
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29611..29889
DNA (279bp) protein (93aa)
Acyl carrier protein n=5 Tax=Rhizobium/Agrobacterium group RepID=G6XPE3_RHIRD
Acyl carrier protein {ECO:0000313|EMBL:EKJ97079.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
acpP; acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_1297_curated_30
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29905..30381
DNA (477bp) protein (159aa)
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]
(3R)-hydroxymyristoyl-ACP dehydratase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HJS6_9RHIZ
3-hydroxyacyl-ACP dehydratase {ECO:0000313|EMBL:KGE00666.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Displaying items 1-30 of 49 in total

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