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SCNpilot_expt_1000_bf_scaffold_3942_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3942_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..215
DNA (213bp) protein (71aa)
pbp; cell wall biosynthesis penicillin-binding protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Cell wall biosynthesis penicillin-binding protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JBK5_AGRRK
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:EJK84929.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3942_curated_2
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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816..1010
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AUZ0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27230.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1003..1551
DNA (549bp) protein (183aa)
membrane protein n=1 Tax=Rhizobium phaseoli RepID=UPI00030BE740
Uncharacterized protein {ECO:0000313|EMBL:EPE98996.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_4
unknown

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comp(1654..1824)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3942_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2381..3394
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D807B
Uncharacterized protein {ECO:0000313|EMBL:EJC73678.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3398..3751)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NA58_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJB03602.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3863..4750)
DNA (888bp) protein (296aa)
Putative peptidoglycan-binding domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AUY3_9RHIZ
Putative peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:EJJ27220.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
peptidoglycan-binding protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4722..6251)
DNA (1530bp) protein (510aa)
integral membrane sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZVB9_RHILW
SCNpilot_expt_1000_bf_scaffold_3942_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6718..7140
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B6B58C
Uncharacterized protein {ECO:0000313|EMBL:EYR83061.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7318..7737
DNA (420bp) protein (140aa)
cysteine desufuration protein SufE n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037F91BD
Fe-S metabolism associated SufE {ECO:0000313|EMBL:EPE98988.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Putative sufE-like protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7581..8549)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003656C17
ATPase involved in DNA replication initiation {ECO:0000313|EMBL:CDN47012.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8542..8976)
DNA (435bp) protein (145aa)
ATPase involved in DNA replication initiation n=1 Tax=Rhizobium sp. CF080 RepID=J3C4F1_9RHIZ
Transposase {ECO:0000313|EMBL:KGD85841.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3942_curated_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9186..9614)
DNA (429bp) protein (143aa)
Transcriptional regulatory protein RosR/MucR n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LID8_RHITR
transcriptional regulatory protein RosR/MucR
Transcriptional regulatory protein RosR/MucR {ECO:0000313|EMBL:AGB70481.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3942_curated_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10083..10421)
DNA (339bp) protein (113aa)
Na+/H+ antiporter protein, subunit G n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A3W6_RHIET
Na+/H+ antiporter protein, subunit G {ECO:0000313|EMBL:EGE60766.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
mnhG; monovalent cation/H+ antiporter subunit G; K05571 multicomponent Na+:H+ antiporter subunit G
SCNpilot_expt_1000_bf_scaffold_3942_curated_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10418..10786)
DNA (369bp) protein (123aa)
PhaF2 protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V597_9RHIZ
PhaF2 protein {ECO:0000313|EMBL:ENN86192.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative monovalent cation/H+ antiporter subunit F; K05570 multicomponent Na+:H+ antiporter subunit F
SCNpilot_expt_1000_bf_scaffold_3942_curated_16
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10786..11259)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031FC959
Na(+)/H(+) antiporter subunit E Multiple resistance and pH homeostasis protein E {ECO:0000313|EMBL:CDM56905.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
phaE2; Na(+)/H(+) antiporter subunit E
SCNpilot_expt_1000_bf_scaffold_3942_curated_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11256..12569)
DNA (1314bp) protein (438aa)
cation:proton antiporter n=1 Tax=Rhizobium leguminosarum RepID=UPI000370DD40
mnhD; multisubunit Na+/H+ antiporter subunit D
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit {ECO:0000313|EMBL:EJC70175.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
Displaying 17 items

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