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SCNpilot_expt_1000_bf_scaffold_4670_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4670_curated_1
unknown

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comp(2..112)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4670_curated_2
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

646..1059
DNA (414bp) protein (138aa)
ubiG; bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-octaprenyl-6-hydroxyphenyl methylase (EC:2.1.1.222 2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2KW30_9RHIZ
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_4670_curated_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1075..1383)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D7R2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA03753.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4670_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1648..2076)
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZRR9_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI56796.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_4670_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2073..2927)
DNA (855bp) protein (285aa)
Amidohydrolase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JB81_AGRRK
Nitrilase {ECO:0000313|EMBL:KEA03755.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_4670_curated_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2932..3192)
DNA (261bp) protein (87aa)
Glutaredoxin, GrxC family n=1 Tax=Rhizobium sp. AP16 RepID=J2LFH1_9RHIZ
Glutaredoxin, GrxC family {ECO:0000313|EMBL:EJK86236.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
grxC; glutaredoxin; K03676 glutaredoxin 3
SCNpilot_expt_1000_bf_scaffold_4670_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3239..3967)
DNA (729bp) protein (243aa)
Putative amidophosphoribosyltransferase n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JV36_RHILV
Putative amidophosphoribosyltransferase {ECO:0000313|EMBL:EJC68279.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4670_curated_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4080..4985
DNA (906bp) protein (302aa)
Methyltransferase family protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KW36_9RHIZ
Methyltransferase family protein {ECO:0000313|EMBL:EJJ25397.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
methyltransferase protein
SCNpilot_expt_1000_bf_scaffold_4670_curated_9
unknown

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comp(5055..5225)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4670_curated_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5331..5651)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UBS4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87598.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_4670_curated_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5749..6177)
DNA (429bp) protein (143aa)
mutator MutT protein; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
Mutator mutT protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AQ67_9RHIZ
Mutator mutT protein {ECO:0000313|EMBL:EJJ25400.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_4670_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6189..6725)
DNA (537bp) protein (179aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZG5_9RHIZ
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGD87732.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4670_curated_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6982..8223)
DNA (1242bp) protein (414aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
N-acetylglutamate synthase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000372FB9C
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_4670_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8277..9116)
DNA (840bp) protein (280aa)
foldase/peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
peptidylprolyl isomerase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035CEF16
Parvulin-like peptidyl-prolyl isomerase {ECO:0000313|EMBL:EJC68286.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_4670_curated_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9361..12087
DNA (2727bp) protein (909aa)
Protein translocase subunit SecA n=2 Tax=Rhizobium etli RepID=SECA_RHIEC rbh
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_4670_curated_16
unknown

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comp(12238..12876)
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4670_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13317..13595
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037458D8
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EYR79747.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polysaccharide biosynthesis associated protein
Displaying 17 items

View Taxonomy