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SCNpilot_expt_1000_bf_scaffold_4270_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4270_curated_1
unknown

Not on your lists

comp(1..222)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4270_curated_2
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

608..1258
DNA (651bp) protein (217aa)
acyl-CoA dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E8A8F
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL54939.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
acyl-CoA dehydrogenase protein
SCNpilot_expt_1000_bf_scaffold_4270_curated_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1268..1663)
DNA (396bp) protein (132aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Ribonuclease VapC n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K9P3_RHIEC
hypothetical protein; K07062
SCNpilot_expt_1000_bf_scaffold_4270_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1660..1872)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FJS9_9RHIZ
Transcription regulator of the Arc/MetJ class {ECO:0000313|EMBL:EYR81212.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4270_curated_5
unknown

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2043..2207
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4270_curated_6
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2204..2533
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HJF7_9RHIZ
Membrane protein {ECO:0000313|EMBL:KEQ06804.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4270_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2473..2964)
DNA (492bp) protein (164aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative Holliday junction resolvase (EC:3.1.-.-)
Putative Holliday junction resolvase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4L3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4270_curated_8
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2975..3277)
DNA (303bp) protein (101aa)
Putative polybetahydroxybutyrate synthesis PhnA protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VUN7_9RHIZ
Putative phosphonate metabolizing protein {ECO:0000313|EMBL:GAK71083.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
phnA; Protein PhnA
SCNpilot_expt_1000_bf_scaffold_4270_curated_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3361..4065
DNA (705bp) protein (235aa)
UPF0173 metal-dependent hydrolase QWE_18113 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBX6_9RHIZ
UPF0173 metal-dependent hydrolase PDO_1279 {ECO:0000256|HAMAP-Rule:MF_00457}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_4270_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4162..4449
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A8Z0_RHIET
SCNpilot_expt_1000_bf_scaffold_4270_curated_11
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4500..5981
DNA (1482bp) protein (494aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
glutamyl-tRNA(Gln) amidotransferase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037DCB8F
gatA; glutamyl-tRNA(Gln) amidotransferase, subunit A
SCNpilot_expt_1000_bf_scaffold_4270_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5975..6493
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037355DC
Uncharacterized protein {ECO:0000313|EMBL:KJX88869.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4270_curated_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7131..7565
DNA (435bp) protein (145aa)
UPI0003CDF7E0 related cluster n=1 Tax=unknown RepID=UPI0003CDF7E0
Uncharacterized protein {ECO:0000313|EMBL:CDX25930.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4270_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7519..8259
DNA (741bp) protein (247aa)
Band 7 protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVL9_9RHIZ
Band 7 protein {ECO:0000313|EMBL:EYR80758.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protease subunit, stomatin/prohibitin
SCNpilot_expt_1000_bf_scaffold_4270_curated_15
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8299..8556)
DNA (258bp) protein (86aa)
UPF0386 protein PMI11_06233 n=1 Tax=Rhizobium sp. CF142 RepID=J2KWN2_9RHIZ
UPF0386 protein PMI11_06233 {ECO:0000256|HAMAP-Rule:MF_00827}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein; K09982 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4270_curated_16
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8861..9370
DNA (510bp) protein (170aa)
Acetyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J3ARK6_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:CDN47445.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4270_curated_17
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9478..10980
DNA (1503bp) protein (501aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LL85_RHITR
aspartyl/glutamyl-tRNA amidotransferase, subunit B
SCNpilot_expt_1000_bf_scaffold_4270_curated_18
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10984..11478
DNA (495bp) protein (165aa)
Acetyltransferase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QTV1_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EKF58552.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4270_curated_19
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11700..12098
DNA (399bp) protein (133aa)
NADH dehydrogenase (EC:1.6.99.3); K00356 NADH dehydrogenase [EC:1.6.99.3]
NADH dehydrogenase (Ubiquinone) protein n=2 Tax=Rhizobium etli RepID=S5SIV7_RHIET
Putative NADH-ubiquinone oxidoreductase chain b17.2 like protein {ECO:0000313|EMBL:ABC90656.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_4270_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12176..12616
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JDN8_AGRRK
hypothetical protein
Glycosyl hydrolase family 5 {ECO:0000313|EMBL:KEA07194.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4270_curated_21
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12635..13345)
DNA (711bp) protein (237aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0VPM1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ19585.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4270_curated_22
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13421..14035)
DNA (615bp) protein (205aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium ga
aat; leucyl/phenylalanyl-tRNA--protein transferase; K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase n=2 Tax=Rhizobium/Agrobacterium group RepID=LFTR_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_4270_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14041..15375)
DNA (1335bp) protein (445aa)
Biotin carboxylase {ECO:0000313|EMBL:EYR80769.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EYR80769.1};; EC=6.4.1.2 {ECO:0000313|EMBL:EYR80769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
accB; acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.3.4.14); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Biotin carboxylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU14_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4270_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15387..15734)
DNA (348bp) protein (116aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W0A0_RHILT
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EJC79106.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
Displaying 24 items

View Taxonomy