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SCNpilot_expt_1000_bf_scaffold_1520_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1520_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(203..1096)
DNA (894bp) protein (298aa)
Hydrolase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC63_AGRRK
hydrolase
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJK85182.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1520_curated_2
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1172..3238)
DNA (2067bp) protein (689aa)
Lytic transglycosylase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CZ90_RHILU
Lytic transglycosylase {ECO:0000313|EMBL:EKJ94710.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
Soluble lytic murein transglycosylase-like protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3498..4382
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
dapAch2; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PUM9_RHIE6
SCNpilot_expt_1000_bf_scaffold_1520_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4507..4983
DNA (477bp) protein (159aa)
SsrA-binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBA6_9RHIZ
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
smpB; SsrA-binding protein; K03664 SsrA-binding protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_5
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4992..5405
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F415_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS52509.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_6
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5434..6408)
DNA (975bp) protein (325aa)
Methyl-accepting chemotaxis protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D3P1_9RHIZ
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EDQ33710.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6469..6945)
DNA (477bp) protein (159aa)
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H6L9_RHIRD
Chemotaxis protein {ECO:0000313|EMBL:KDR88900.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7186..7764)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ATG3_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS55439.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1520_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8067..8477
DNA (411bp) protein (137aa)
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; Short=RNAP omega subunit {ECO:0000255|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000255|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
DNA-directed RNA polymerase subunit omega n=2 Tax=Rhizobium leguminosarum bv. viciae RepID=RPOZ_RHIL3
SCNpilot_expt_1000_bf_scaffold_1520_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8577..10817
DNA (2241bp) protein (747aa)
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Rhizobium sp. CF142 RepID=J2AWH9_9RHIZ
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:EJJ27830.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GTP pyrophosphokinase
SCNpilot_expt_1000_bf_scaffold_1520_curated_11
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11083..11235
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U7A4_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR59534.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_1520_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11356..11934
DNA (579bp) protein (193aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000374C63B
Uncharacterized protein {ECO:0000313|EMBL:EJC70313.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein; K09928 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11998..12414
DNA (417bp) protein (139aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
acpS; acyl carrier protein synthase (ACP-CoA phosphopantetheinyltransferase)(Holo-ACP synthase)(holo-[acyl-carrier-protein] synthase (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase)) (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Rhizobium sp. CF122 RepID=J3BRX8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1520_curated_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12481..13245
DNA (765bp) protein (255aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
lepB; signal peptidase I protein (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
signal peptidase n=1 Tax=Rhizobium mongolense RepID=UPI0003B547F0
SCNpilot_expt_1000_bf_scaffold_1520_curated_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13242..13961
DNA (720bp) protein (240aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease 3; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ribonuclease III n=1 Tax=Rhizobium mongolense RepID=UPI0003B39A2A
rnc; ribonuclease III
SCNpilot_expt_1000_bf_scaffold_1520_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14995..15744
DNA (750bp) protein (250aa)
cAMP-binding protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2V4_9RHIZ
cAMP-binding protein {ECO:0000313|EMBL:EJJ27837.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
Crp/Fnr family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1520_curated_17
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16016..16441
DNA (426bp) protein (142aa)
Response regulator receiver protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HM10_9RHIZ
Response regulator receiver protein {ECO:0000313|EMBL:EPE99110.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_1520_curated_18
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16629..17366
DNA (738bp) protein (246aa)
DNA repair protein RecO n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UB93_RHIRD
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_expt_1000_bf_scaffold_1520_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17350..18204)
DNA (855bp) protein (285aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC77_AGRRK
hypothetical protein; K07140
Uncharacterized protein {ECO:0000313|EMBL:ACM25998.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1520_curated_20
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18204..18893)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J8Q2_9RHIZ
Phosphohydrolase {ECO:0000313|EMBL:KGD99157.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein; K06950 uncharacterized protein rbh
SCNpilot_expt_1000_bf_scaffold_1520_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18929..19603)
DNA (675bp) protein (225aa)
membrane protein n=1 Tax=Rhizobium radiobacter RepID=UPI00037612D0
hypothetical protein rbh
Membrane protein {ECO:0000313|EMBL:EPR07495.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Displaying 21 items

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