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SCNpilot_expt_1000_bf_scaffold_2512_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2512_curated_1
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1633)
DNA (1632bp) protein (544aa)
Glutamate synthase (NADPH/NADH) large chain {ECO:0000313|EMBL:CDM59203.1}; EC=1.4.1.14 {ECO:0000313|EMBL:CDM59203.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
gltB; glutamate synthase (NADPH) large subunit (EC:1.4.1.13)
Glutamate synthase family protein n=1 Tax=Rhizobium sp. CF122 RepID=J2I8U0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2512_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2171..3223
DNA (1053bp) protein (351aa)
ltaE; low-specificity l-threonine aldolase (EC:4.1.2.5); K01620 threonine aldolase [EC:4.1.2.5]
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
threonine aldolase n=1 Tax=Rhizobium gallicum RepID=UPI00035EF7DC
SCNpilot_expt_1000_bf_scaffold_2512_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3469..4335)
DNA (867bp) protein (289aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BP13_RHILV
Transcriptional regulator {ECO:0000313|EMBL:EJC68075.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2512_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4428..5423
DNA (996bp) protein (332aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037B1A63
Na+/bile acid cotransporter protein {ECO:0000313|EMBL:KEC74562.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
transmembrane protein; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
SCNpilot_expt_1000_bf_scaffold_2512_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5480..5962)
DNA (483bp) protein (161aa)
Molecular chaperone (Small heat shock protein) n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VWN7_RHILT
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:EJC77806.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
heat shock protein Hsp20; K04080 molecular chaperone IbpA
SCNpilot_expt_1000_bf_scaffold_2512_curated_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6372..7340
DNA (969bp) protein (323aa)
lysophospholipase (EC:3.1.1.5); K01048 lysophospholipase [EC:3.1.1.5]
lysophospholipase n=1 Tax=Rhizobium RepID=UPI000374DA9D
Lysophospholipase protein {ECO:0000313|EMBL:AJC81097.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_2512_curated_7
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7360..8133)
DNA (774bp) protein (258aa)
Putative monophosphatase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V8R2_9RHIZ
Inositol monophosphatase {ECO:0000313|EMBL:KGD92022.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
inositol monophosphatase family protein
SCNpilot_expt_1000_bf_scaffold_2512_curated_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8408..9292)
DNA (885bp) protein (295aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhizobium sp. CF142 RepID=J1T4R5_9RHIZ
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EJJ26641.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
N-formylglutamate amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2512_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9487..9849
DNA (363bp) protein (121aa)
Chemotaxis response regulator n=10 Tax=Rhizobium/Agrobacterium group RepID=F0LD16_AGRSH
chemotaxis response regulator; K13589 two-component system, cell cycle response regulator CpdR
Chemotaxis response regulator {ECO:0000313|EMBL:EMS99617.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
SCNpilot_expt_1000_bf_scaffold_2512_curated_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10121..11470)
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Two component sensor kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMR2_RHITR
two component sensor kinase
SCNpilot_expt_1000_bf_scaffold_2512_curated_11
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11477..12130)
DNA (654bp) protein (218aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ48_9RHIZ
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJN02118.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
two component response regulator
SCNpilot_expt_1000_bf_scaffold_2512_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12196..13911)
DNA (1716bp) protein (572aa)
Sulfatase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HFI0_RHIRD
Sulfatase {ECO:0000313|EMBL:EHJ95936.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
sulfatase; K03760 phosphoethanolamine transferase
SCNpilot_expt_1000_bf_scaffold_2512_curated_13
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14178..14411
DNA (234bp) protein (78aa)
Uncharacterized protein n=3 Tax=Ochrobactrum RepID=M5JMV6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ93841.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein; K09794 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2512_curated_14
unknown

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14558..14794
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037B178B
SCNpilot_expt_1000_bf_scaffold_2512_curated_15
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15039..16673
DNA (1635bp) protein (545aa)
Dihydroxyacetone kinase {ECO:0000313|EMBL:CDM60765.1}; EC=2.7.1.29 {ECO:0000313|EMBL:CDM60765.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Glycerone kinase (EC:2.7.1.29); K00863 dihydroxyacetone kinase [EC:2.7.1.29]
Dihydroxyacetone kinase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HFL0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2512_curated_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16786..17598)
DNA (813bp) protein (271aa)
cytoplasmic protein; K06606 inosose isomerase [EC:5.3.99.-]
Putative cytoplasmic protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KM66_RHISN
Putative cytoplasmic protein {ECO:0000313|EMBL:ACP23502.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_2512_curated_17
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17689..18714)
DNA (1026bp) protein (342aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K02057 simple sugar transport system permease protein
Sugar ABC transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HBQ8_9RHIZ
Sugar ABC transporter {ECO:0000313|EMBL:EPE96039.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_2512_curated_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18748..20289)
DNA (1542bp) protein (514aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
D-ribose transporter ATP binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B559B0
SCNpilot_expt_1000_bf_scaffold_2512_curated_19
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20365..21294)
DNA (930bp) protein (310aa)
rhizopine-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B35C60
Rhizopine ABC transporter substrate-binding protein MocB 1 {ECO:0000313|EMBL:AJD43274.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
mocB1; rhizopine-binding protein MocB
SCNpilot_expt_1000_bf_scaffold_2512_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21661..22566)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U7K3_9RHIZ
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:KEA07524.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
putative oxoreductase
SCNpilot_expt_1000_bf_scaffold_2512_curated_21
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23193..23912
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae DSM 30104 RepID=J2DR43_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:EJK92939.1}; TaxID=1162296 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae subsp. pneumoniae DSM 30104.;"
SCNpilot_expt_1000_bf_scaffold_2512_curated_22
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23879..24784)
DNA (906bp) protein (302aa)
iolE; hypothetical protein; K03335 inosose dehydratase [EC:4.2.1.44]
Sugar phosphate isomerase/epimerase n=1 Tax=Rhizobium sp. CF080 RepID=J2JFA0_9RHIZ
Rhizopine catabolism protein MocC {ECO:0000313|EMBL:CDN52103.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_2512_curated_23
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24789..25742)
DNA (954bp) protein (318aa)
iolD; acetolactate synthase; K03336 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [EC:3.7.1.-]
Acetolactate synthase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PIY8_9RHIZ
Acetolactate synthase {ECO:0000313|EMBL:EKF60828.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
Displaying 23 items

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