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SCNpilot_expt_1000_bf_scaffold_649_curated

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_649_curated_1
unknown

Not on your lists

comp(2..358)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_649_curated_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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504..1022
DNA (519bp) protein (173aa)
Sarcosine oxidase subunit beta n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QXV9_9RHIZ
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:EKF60277.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
sarcosine oxidase subunit beta
SCNpilot_expt_1000_bf_scaffold_649_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1032..1310
DNA (279bp) protein (93aa)
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:EYR80873.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR80873.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000373B1F2
soxDe; sarcosine oxidase subunit delta
SCNpilot_expt_1000_bf_scaffold_649_curated_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1307..4264
DNA (2958bp) protein (986aa)
soxAe; sarcosine oxidase subunit alpha; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, alpha subunit family, heterotetrameric form n=1 Tax=Rhizobium sp. AP16 RepID=J2LJR4_9RHIZ
Sarcosine oxidase, alpha subunit family, heterotetrameric form {ECO:0000313|EMBL:EJK87846.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_5
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4275..4826
DNA (552bp) protein (184aa)
Sarcosine oxidase gamma subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBC1_9RHIZ
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:EHS49896.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
sarcosine oxidase gamma subunit
SCNpilot_expt_1000_bf_scaffold_649_curated_6
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5077..7503
DNA (2427bp) protein (809aa)
glycine cleavage system T protein; K00315 dimethylglycine dehydrogenase [EC:1.5.8.4]
Glycine cleavage system T protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8Z4_9RHIZ
Glycine cleavage system T protein {ECO:0000313|EMBL:EKF60269.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7816..8718
DNA (903bp) protein (301aa)
ABC-type transporter, integral membrane subunit n=8 Tax=Rhizobium meliloti RepID=F6BNS0_SINMB
Branched-chain amino acid transporter permease subunit LivH {ECO:0000313|EMBL:KDP73030.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_649_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8723..10279
DNA (1557bp) protein (519aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLT9_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EHK58347.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_649_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10279..11151
DNA (873bp) protein (291aa)
ABC transporter related n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZMQ9_RHILW
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACI56337.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_649_curated_10
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11348..11860
DNA (513bp) protein (171aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Rhizobium sp. CF122 RepID=J2RWN4_9RHIZ
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL57107.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
braG; amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_649_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11885..12229
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9F1_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:EYR77675.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_649_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12348..13472
DNA (1125bp) protein (375aa)
Leu/Ile/Val-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2P5_9RHIZ
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR80882.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
livK; putative leucine-specific binding protein precursor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_649_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13579..14505)
DNA (927bp) protein (309aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhizobium sp. CF080 RepID=J2K834_9RHIZ
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGD99922.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
two-component response regulator protein
SCNpilot_expt_1000_bf_scaffold_649_curated_14
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14495..16117)
DNA (1623bp) protein (541aa)
Sensor histidine kinase with a response regulator receiver domain (Two-component signal transduction system) n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PWC0_9RHIZ
Sensor histidine kinase with a response regulator receiver domain (two-component signal transduction system)
Sensor histidine kinase with a response regulator receiver domain (Two-component signal transduction system) {ECO:0000313|EMBL:CDI09384.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_15
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16114..17979)
DNA (1866bp) protein (622aa)
Autoinducer 2 sensor kinase/phosphatase luxQ {ECO:0000313|EMBL:CDM60901.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CDM60901.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
ATPase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000377F055
multi-sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_649_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18237..19526
DNA (1290bp) protein (430aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium radiobacter RepID=UPI00036A4798
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:EPR22775.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Putative branched-chain amino acid ABC transporter (substrate-binding protein)
SCNpilot_expt_1000_bf_scaffold_649_curated_17
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19859..21463
DNA (1605bp) protein (535aa)
Urea/amide ABC transporter transmembrane protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QGP4_9RHIZ
Urea/amide ABC transporter transmembrane protein {ECO:0000313|EMBL:EKF60256.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
lsrC; Autoinducer 2 import system permease protein lsrC AI-2 import system permease protein lsrC; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_649_curated_18
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21460..22641
DNA (1182bp) protein (394aa)
Urea/amide ABC transporter, membrane spanning protein n=2 Tax=Agrobacterium RepID=F0L1V4_AGRSH
Amino acid ABC transporter permease {ECO:0000313|EMBL:KJF66194.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
urea/amide ABC transporter transmembrane protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_649_curated_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22647..23399
DNA (753bp) protein (251aa)
urea ABC transporter ATP-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E8BF2
livG2; branched-chain amino acid transport ATP-binding protein LivG
Putative branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AFL50228.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_20
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23656..24351
DNA (696bp) protein (232aa)
urea/amide ABC transporter nucleotide-binding protein/ATPase (EC:3.6.3.25); K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter, nucleotide binding/ATPase protein (Urea/amide) n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U5J2_RHIRD
Urea ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF66262.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24561..25379
DNA (819bp) protein (273aa)
Urease accessory protein UreD n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V7R4_9RHIZ
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ureD; urease accessory protein; K03190 urease accessory protein
SCNpilot_expt_1000_bf_scaffold_649_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25449..25751
DNA (303bp) protein (101aa)
ureA; urease subunit gamma (EC:3.5.1.5); K01430 urease subunit gamma [EC:3.5.1.5]
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
Urease subunit gamma n=2 Tax=Rhizobium leguminosarum RepID=C6AUI9_RHILS
SCNpilot_expt_1000_bf_scaffold_649_curated_23
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25764..26018
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B4EF7F
Uncharacterized protein {ECO:0000313|EMBL:AJD42231.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_649_curated_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26029..26334
DNA (306bp) protein (102aa)
ureB; urease subunit beta; K01429 urease subunit beta [EC:3.5.1.5]
Urease subunit beta {ECO:0000255|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000255|HAMAP-Rule:MF_01954}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
urease subunit beta n=1 Tax=Rhizobium mongolense RepID=UPI0003B5FC70
SCNpilot_expt_1000_bf_scaffold_649_curated_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26338..26760
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LL94_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB72143.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_26
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26760..27434
DNA (675bp) protein (225aa)
Urease-associated protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0W1X4_9RHIZ
Urease-associated protein {ECO:0000313|EMBL:EJZ17669.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
urease-associated protein
SCNpilot_expt_1000_bf_scaffold_649_curated_27
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27441..29405
DNA (1965bp) protein (655aa)
ureC; urease subunit alpha; K01428 urease subunit alpha [EC:3.5.1.5]
Urease subunit alpha {ECO:0000255|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01953};; Urea amidohydrolase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01953}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
urease subunit alpha n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036A8708
SCNpilot_expt_1000_bf_scaffold_649_curated_28
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29612..30283
DNA (672bp) protein (224aa)
Urease accessory protein UreF n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J8L9_AGRRK
ureF; urease accessory protein; K03188 urease accessory protein
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_649_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30336..30947
DNA (612bp) protein (204aa)
Urease accessory protein UreG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8L7_9RHIZ
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ureG; urease accessory protein; K03189 urease accessory protein
SCNpilot_expt_1000_bf_scaffold_649_curated_30
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30966..31658)
DNA (693bp) protein (231aa)
Regulator of Biofilm formation Fnr Family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JR72_AGRVS
regulator of Biofilm formation Fnr Family
Regulator of Biofilm formation Fnr Family {ECO:0000313|EMBL:ACM37483.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
Displaying items 1-30 of 96 in total

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