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SCNpilot_expt_1000_bf_scaffold_2679_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2679_curated_1
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..198)
DNA (198bp) protein (66aa)
cell division protein MraZ n=1 Tax=Rhizobium RepID=UPI000373EB5D
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
cell division protein MraZ; K03925 MraZ protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1100..2332)
DNA (1233bp) protein (411aa)
sarcosine oxidase; K00301 sarcosine oxidase [EC:1.5.3.1]
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium sp. AP16 RepID=J2DHG1_9RHIZ
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJK82272.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_3
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2412..2936)
DNA (525bp) protein (175aa)
Lytic transglycosylase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DPQ7_9RHIZ
Lytic transglycosylase
Lytic transglycosylase {ECO:0000313|EMBL:EJT05116.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3194..3964)
DNA (771bp) protein (257aa)
N-acetylmuramoyl-L-alanine amidase protein (EC:3.5.1.28)
Negative regulator of beta-lactamase expression n=1 Tax=Rhizobium sp. CF142 RepID=J1T2C7_9RHIZ
Negative regulator of beta-lactamase expression {ECO:0000313|EMBL:EJJ25771.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3961..4671)
DNA (711bp) protein (237aa)
Molecular chaperone protein, DnaJ family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKB3_RHITR
molecular chaperone protein, DnaJ family
Molecular chaperone protein, DnaJ family {ECO:0000313|EMBL:AGB71667.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4937..6148
DNA (1212bp) protein (404aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01977}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01977};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01977}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01977}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01977}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase Pfp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHJ3_9RHIZ
diphosphate--fructose-6-phosphate 1-phosphotransferase
SCNpilot_expt_1000_bf_scaffold_2679_curated_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6202..6837
DNA (636bp) protein (212aa)
lysine transporter LysE n=1 Tax=Rhizobium mongolense RepID=UPI0003B72974
LysE family amino acid efflux protein {ECO:0000313|EMBL:AJD41836.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
lysine exporter protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7921..8496)
DNA (576bp) protein (192aa)
6-aminohexanoate-dimer hydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E3759
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ACS57132.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_9
unknown

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9080..9322
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2679_curated_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9444..10694
DNA (1251bp) protein (417aa)
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase n=1 Tax=Rhizobium sp. CF080 RepID=J3CEH7_9RHIZ
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase {ECO:0000313|EMBL:CDN54455.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyltransferase; K13622 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase
SCNpilot_expt_1000_bf_scaffold_2679_curated_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10694..11365
DNA (672bp) protein (224aa)
SAM-dependent methyltransferase protein n=2 Tax=Rhizobium etli RepID=S5SLU2_RHIET
SAM-dependent methyltransferase protein
SAM-dependent methyltransferase protein {ECO:0000313|EMBL:AGS22674.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_12
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11499..12281
DNA (783bp) protein (261aa)
glycoside hydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B6FDD6
Glycoside hydrolase family 25 protein {ECO:0000313|EMBL:AJD41842.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
lyc; glycoside hydrolase; K07273 lysozyme
SCNpilot_expt_1000_bf_scaffold_2679_curated_13
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12372..13562
DNA (1191bp) protein (397aa)
Lytic murein transglycosylase n=1 Tax=Rhizobium sp. RepID=L0NFN3_RHISP
Lytic murein transglycosylase {ECO:0000313|EMBL:CCF19895.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
mltB; lytic murein transglycosylase rbh
SCNpilot_expt_1000_bf_scaffold_2679_curated_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13664..14578
DNA (915bp) protein (305aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JPU5_9RHIZ
Possible transporter, DME family, DMT superfamily protein {ECO:0000313|EMBL:CDN48374.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15137..16045)
DNA (909bp) protein (303aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
metF; methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
5,10-methylenetetrahydrofolate reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI000361ADDB
SCNpilot_expt_1000_bf_scaffold_2679_curated_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16045..17070)
DNA (1026bp) protein (342aa)
ArsR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000367D062
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Putative methyltransferase transcriptional regulator protein, ArsR family {ECO:0000313|EMBL:EGE61648.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_17
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17331..17735)
DNA (405bp) protein (135aa)
Putative fused transporter subunits of ABC superfamily: ATP-binding components n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PSW5_9RHIZ
Putative fused transporter subunits of ABC superfamily: ATP-binding components {ECO:0000313|EMBL:CCM76958.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
putative ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_18
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19066..19863)
DNA (798bp) protein (266aa)
ribonuclease T2; K01169 ribonuclease I (enterobacter ribonuclease) [EC:3.1.27.6]
Ribonuclease I n=1 Tax=Rhizobium sp. CF122 RepID=J2R8V6_9RHIZ
Ribonuclease I {ECO:0000313|EMBL:EJL49017.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20036..20989
DNA (954bp) protein (318aa)
lysophospholipase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036C78B9
lipase
Putative lipase {ECO:0000313|EMBL:CAK08822.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20993..21976
DNA (984bp) protein (328aa)
Putative permease n=1 Tax=Rhizobium sp. CF142 RepID=J2KX57_9RHIZ
Putative permease {ECO:0000313|EMBL:EJJ25787.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
DMT superfamily inner membrane transporter protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22474..23199
DNA (726bp) protein (242aa)
Formyl-CoA transferase {ECO:0000313|EMBL:EUB96107.1}; EC=2.8.3.16 {ECO:0000313|EMBL:EUB96107.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Rhizobium sp. CF080 RepID=J2SW74_9RHIZ
acyl-CoA transferases/L-carnitine dehydratase
SCNpilot_expt_1000_bf_scaffold_2679_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23201..24853
DNA (1653bp) protein (551aa)
iivG; thiamine pyrophosphate protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Acetolactate synthase large subunit n=1 Tax=Rhizobium sp. RepID=L0NG96_RHISP
Thiamine pyrophosphate-binding protein {ECO:0000313|EMBL:KDP75019.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_23
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24934..25278)
DNA (345bp) protein (115aa)
Endoribonuclease L-PSP n=2 Tax=Agrobacterium RepID=F0L819_AGRSH
Endoribonuclease {ECO:0000313|EMBL:KJF73863.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_2679_curated_24
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25383..25721)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A8F0_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE96530.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_2679_curated_25
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25801..26634)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NFN5_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19908.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_26
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27073..27489
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NGA1_RHISP
Putative exported ErfK/YbiS/YhnG family protein {ECO:0000313|EMBL:CDN54471.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2679_curated_27
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27991..28194
DNA (204bp) protein (68aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HI25_9RHIZ
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EPE97730.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
Displaying 27 items

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