ggKbase home page

SCNpilot_expt_1000_bf_scaffold_9820_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9820_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

532..738
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS69_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80299.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9820_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(731..1723)
DNA (993bp) protein (331aa)
Sugar kinase, ribokinase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H433_RHILT
Sugar kinase, ribokinase {ECO:0000313|EMBL:EJB04753.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
PfkB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_9820_curated_3
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2030..3112
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4T8F0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT03232.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
auxin efflux carrier family protein; K07088
SCNpilot_expt_1000_bf_scaffold_9820_curated_4
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3179..3760)
DNA (582bp) protein (194aa)
cysteine desulfurase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037716FC
Cytochrome-c CycM {ECO:0000313|EMBL:AJD39495.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
cycM; cytochrome-c protein; K08738 cytochrome c
SCNpilot_expt_1000_bf_scaffold_9820_curated_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4119..4658
DNA (540bp) protein (180aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhizobium sp. RepID=L0NN45_RHISP
kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase
SCNpilot_expt_1000_bf_scaffold_9820_curated_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4670..5500
DNA (831bp) protein (277aa)
Chorismate mutase/prephenate dehydratase {ECO:0000313|EMBL:CCF21761.1}; EC=4.2.1.51 {ECO:0000313|EMBL:CCF21761.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
pheA; prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51]
Chorismate mutase/prephenate dehydratase n=1 Tax=Rhizobium sp. RepID=L0NLV2_RHISP
SCNpilot_expt_1000_bf_scaffold_9820_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5525..5911
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L9D5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79071.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9820_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5988..6356)
DNA (369bp) protein (123aa)
Glyoxalase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JGU8_AGRRK
glyoxalase
Glyoxalase protein {ECO:0000313|EMBL:ACM24944.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_9820_curated_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6425..7120)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PVG3_9RHIZ
DNA-binding protein {ECO:0000313|EMBL:KGD98187.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9820_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7125..8084)
DNA (960bp) protein (320aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22]
DNA mismatch repair protein MutT n=1 Tax=Rhizobium leguminosarum RepID=UPI0003776130
DNA mismatch repair protein MutT {ECO:0000313|EMBL:AHF86383.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_9820_curated_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8087..8491)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036C0F9D
Diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:KGD98189.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
Displaying 11 items

View Taxonomy