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SCNpilot_expt_1000_bf_scaffold_1495_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1495_curated_1
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..464)
DNA (462bp) protein (154aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KK58_MESAW
Zn-dependent hydrolase, glyoxylase
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AGB44413.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_1495_curated_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(498..1328)
DNA (831bp) protein (277aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquami
tryptophan 2,3-dioxygenase; K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11]
tryptophan 2,3-dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000366E3C5
SCNpilot_expt_1000_bf_scaffold_1495_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1325..2521)
DNA (1197bp) protein (399aa)
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
kynureninase (EC:3.7.1.3); K01556 kynureninase [EC:3.7.1.3]
Kynureninase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSA5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1495_curated_4
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2518..4146)
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase; K08295 2-aminobenzoate-CoA ligase [EC:6.2.1.32]
2-aminobenzoate-CoA ligase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HDT5_9RHIZ
2-aminobenzoate-CoA ligase {ECO:0000313|EMBL:ESZ56676.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
SCNpilot_expt_1000_bf_scaffold_1495_curated_5
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4278..5882)
DNA (1605bp) protein (535aa)
UPI0003CEF965 related cluster n=1 Tax=unknown RepID=UPI0003CEF965
Uncharacterized protein {ECO:0000313|EMBL:ESY72648.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1495_curated_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5879..7240)
DNA (1362bp) protein (454aa)
UPI0003CE440E related cluster n=1 Tax=unknown RepID=UPI0003CE440E
Uncharacterized protein {ECO:0000313|EMBL:ESW77386.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
class III aminotransferase
SCNpilot_expt_1000_bf_scaffold_1495_curated_7
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7391..8323)
DNA (933bp) protein (311aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F972E7
ABC transporter permease {ECO:0000313|EMBL:EWY39104.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative ABC-type transport system, permease component
SCNpilot_expt_1000_bf_scaffold_1495_curated_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8327..9418)
DNA (1092bp) protein (364aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TGY2_MESCW
inner-membrane translocator; K02057 simple sugar transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADV11181.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1495_curated_9
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9415..10980)
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Erwinia toletana RepID=UPI000369986D
Sugar ABC transporter {ECO:0000313|EMBL:KFI26660.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
ATPase component of uncharacterized ABC-type transporter
SCNpilot_expt_1000_bf_scaffold_1495_curated_10
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11068..12102)
DNA (1035bp) protein (345aa)
UPI0003D0180A related cluster n=1 Tax=unknown RepID=UPI0003D0180A
Basic membrane lipoprotein {ECO:0000313|EMBL:ESY99585.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
basic membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_1495_curated_11
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12202..12630
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037567D9
Uncharacterized protein {ECO:0000313|EMBL:AHF76320.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1495_curated_12
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12976..13743
DNA (768bp) protein (256aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
short-chain dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B62ED8
Uncharacterized protein {ECO:0000313|EMBL:KHS09920.1}; TaxID=87883 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans.;"
SCNpilot_expt_1000_bf_scaffold_1495_curated_13
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13955..14695)
DNA (741bp) protein (247aa)
Transcriptional regulator, GntR-family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHU5_BORPD
GntR family transcriptional regulator
Transcriptional regulator, GntR-family {ECO:0000313|EMBL:CAP41988.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying 13 items

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