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SCNpilot_expt_1000_bf_scaffold_6286_curated

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6286_curated_1
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1005)
DNA (1005bp) protein (335aa)
mtnA; methylthioribose-1-phosphate isomerase (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000255|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000255|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000255|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01678}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae
methylthioribose-1-phosphate isomerase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035E59B8
SCNpilot_expt_1000_bf_scaffold_6286_curated_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1002..1241)
DNA (240bp) protein (80aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
5-methylthioribose kinase (EC:2.7.1.100); K00899 5-methylthioribose kinase [EC:2.7.1.100]
methylthioribose kinase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000368509C
SCNpilot_expt_1000_bf_scaffold_6286_curated_3
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2396..3904
DNA (1509bp) protein (503aa)
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037C20EB
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKC32235.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_6286_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3905..4960
DNA (1056bp) protein (352aa)
ABC transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000288B25C
Ribose ABC transporter, permease protein {ECO:0000313|EMBL:AHK46269.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
monosaccharide-transporting ATPase; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6286_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5020..6072
DNA (1053bp) protein (351aa)
Putative sugar ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4E7_9RHIZ
Putative sugar ABC transporter {ECO:0000313|EMBL:EYR81684.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sugar uptake ABC transporter periplasmic solute-binding protein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6286_curated_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6144..7043)
DNA (900bp) protein (300aa)
Sugar kinase, ribokinase n=1 Tax=Rhizobium sp. CF080 RepID=J2H735_9RHIZ
Fructokinase {ECO:0000313|EMBL:CDN52455.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
putative fructokinase
Displaying 6 items

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