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SCNpilot_expt_1000_bf_scaffold_2485_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2485_curated_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..168)
DNA (168bp) protein (56aa)
Aldehyde oxidase/xanthine dehydrogenase family protein {ECO:0000313|EMBL:AJD46254.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_2485_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(165..1016)
DNA (852bp) protein (284aa)
Xanthine dehydrogenase family protein, medium subunit n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FN40_PELBH
Molybdopterin dehydrogenase FAD-binding protein {ECO:0000313|EMBL:AJD46253.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
xanthine dehydrogenase, medium subunit
SCNpilot_expt_1000_bf_scaffold_2485_curated_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1307..1747
DNA (441bp) protein (147aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JI56_AGRRK
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AJD46252.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_4
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1740..2438)
DNA (699bp) protein (233aa)
ABC transporter related protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y596_MESOW
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJD46251.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2441..3172)
DNA (732bp) protein (244aa)
UPI0003CE9088 related cluster n=1 Tax=unknown RepID=UPI0003CE9088
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJD46250.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3160..4122)
DNA (963bp) protein (321aa)
UPI0003CFE239 related cluster n=1 Tax=unknown RepID=UPI0003CFE239
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:AJD46249.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4119..5000)
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Nitratireductor indicus C115 RepID=K2PGV8_9RHIZ
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:AJD46248.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2485_curated_8
unknown

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5055..5249
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2485_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5228..6541)
DNA (1314bp) protein (438aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036AB382
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJD46247.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2485_curated_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6948..8402
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KCG7_MESAW
Uncharacterized protein {ECO:0000313|EMBL:AJD46244.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8406..8951)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2TN65_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJD41560.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9127..12714
DNA (3588bp) protein (1196aa)
TPR repeat-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZUT6_RHILW
TPR repeat-containing protein {ECO:0000313|EMBL:ACI55645.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2485_curated_13
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12714..14690
DNA (1977bp) protein (659aa)
putative Chase2 sensor protein; K01768 adenylate cyclase [EC:4.6.1.1]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000371A425
Putative Chase2 sensor protein {ECO:0000313|EMBL:ABR58917.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 13 items

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