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SCNpilot_expt_1000_bf_scaffold_2493_curated

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Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2493_curated_1
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..199
DNA (198bp) protein (66aa)
Putative transposase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YSG8_9PROT
Putative transposase {ECO:0000313|EMBL:EKM98038.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
transposase IS4
SCNpilot_expt_1000_bf_scaffold_2493_curated_2
unknown

Not on your lists

587..883
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2493_curated_3

Not on your lists

971..2107
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B77E7
Marine sediment metagenome DNA, contig: S01H1_C00692 {ECO:0000313|EMBL:GAF81188.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_4
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(2094..3587)
DNA (1494bp) protein (498aa)
ribose import ATP-binding protein RbsA 1 (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A0E43
SCNpilot_expt_1000_bf_scaffold_2493_curated_5
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3606..4565)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037793BB
Putative uncharacterized protein {ECO:0000313|EMBL:EEG50868.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
periplasmic binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2493_curated_6
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4586..5566)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377E843
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter {ECO:0000313|EMBL:EXG80653.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
inner-membrane translocator; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2493_curated_7
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5566..6747)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003725DD0
ROK family protein
ROK family protein {ECO:0000313|EMBL:ABW14546.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6857..8098
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380C7EF
Amidohydrolase family protein {ECO:0000313|EMBL:EHM03509.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
amidohydrolase, imidazolonepropionase
SCNpilot_expt_1000_bf_scaffold_2493_curated_9
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8715..9161)
DNA (447bp) protein (149aa)
Opacity protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BVF2_9RHIZ
Opacity protein {ECO:0000313|EMBL:EJL58484.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2493_curated_10
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9604..9870)
DNA (267bp) protein (89aa)
Low calcium response locus protein S n=1 Tax=Ahrensia sp. R2A130 RepID=E0MRS7_9RHOB
Transposase {ECO:0000313|EMBL:AJY45407.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
putative IS3 family transposase, IS407 group, OrfA
SCNpilot_expt_1000_bf_scaffold_2493_curated_11
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10097..10642)
DNA (546bp) protein (182aa)
Amidohydrolase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KL16_MESAW
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AGB45315.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_12
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10608..11252)
DNA (645bp) protein (215aa)
Cellulose synthesis protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QX46_9RHIZ
Cellulose synthesis protein {ECO:0000313|EMBL:EKF59962.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
celE; Amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2493_curated_13
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11339..12319)
DNA (981bp) protein (327aa)
Alpha/beta hydrolase fold-3 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DK2_MESSB
Alpha/beta hydrolase fold-3
Alpha/beta hydrolase fold-3 {ECO:0000313|EMBL:ABG64523.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_14
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12422..13195)
DNA (774bp) protein (258aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DK3_MESSB
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABG64522.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_15
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13358..13981
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4NTN3_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ85182.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2493_curated_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14292..15182
DNA (891bp) protein (297aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DK4_MESSB
extracellular solute-binding protein
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:ABG64521.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15202..16335
DNA (1134bp) protein (378aa)
Amino acid ABC transporter membrane protein, PAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DK5_MESSB
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
Amino acid ABC transporter membrane protein, PAAT family {ECO:0000313|EMBL:ABG64520.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_18
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16386..17036
DNA (651bp) protein (217aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Amino acid ABC transporter ATP-binding protein, PAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DK6_MESSB
Amino acid ABC transporter ATP-binding protein, PAAT family {ECO:0000313|EMBL:ABG64519.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17931..18731)
DNA (801bp) protein (267aa)
Putative ribose ABC transporter (ATP-binding protein) {ECO:0000313|EMBL:CDX32130.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX32130.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WN17_VEREI
SCNpilot_expt_1000_bf_scaffold_2493_curated_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19432..20556)
DNA (1125bp) protein (375aa)
Strictosidine synthase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WN16_VEREI
Uncharacterized protein {ECO:0000313|EMBL:CDX32128.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
strictosidine synthase
SCNpilot_expt_1000_bf_scaffold_2493_curated_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20553..22667)
DNA (2115bp) protein (705aa)
ABC transporter n=1 Tax=Nitratireductor indicus C115 RepID=K2P2P7_9RHIZ
ABC transporter {ECO:0000313|EMBL:CDX32126.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_2493_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22738..23736)
DNA (999bp) protein (333aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI08_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDX32124.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter substrate-binding protein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2493_curated_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23771..24787)
DNA (1017bp) protein (339aa)
ABC transporter permease (EC:3.6.3.17); K02057 simple sugar transport system permease protein
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2N2I3_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:CDX32122.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_24
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24787..25545)
DNA (759bp) protein (253aa)
short chain enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Rhizobium sp. CF080 RepID=J2T9D8_9RHIZ
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EUB99394.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25545..26789)
DNA (1245bp) protein (415aa)
Formyl-CoA transferase {ECO:0000313|EMBL:EUB99393.1}; EC=2.8.3.16 {ECO:0000313|EMBL:EUB99393.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Rhizobium sp. CF080 RepID=J3CMW8_9RHIZ
formyl-CoA transferase
SCNpilot_expt_1000_bf_scaffold_2493_curated_26
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27022..28326)
DNA (1305bp) protein (435aa)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.88 {ECO:0000256|RuleBase:RU361219};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
Hydroxymethylglutaryl-CoA reductase, degradative n=1 Tax=Rhizobium sp. CF080 RepID=J2K3H2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2493_curated_27
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28439..29839
DNA (1401bp) protein (467aa)
Transcriptional regulator with HTH domain and aminotransferase domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CML0_9RHIZ
Transcriptional regulator, GntR family with aminotransferase domain containing protein {ECO:0000313|EMBL:EUB99391.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ydcR; GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2493_curated_28
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29937..32357)
DNA (2421bp) protein (807aa)
dimethylglycine dehydrogenase (EC:1.5.8.4)
Dimethylglycine dehydrogenase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FW72_RHIML
Dimethylglycine dehydrogenase {ECO:0000313|EMBL:EHK78708.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_29
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32582..33469)
DNA (888bp) protein (296aa)
Transcriptional regulator, LysR family n=6 Tax=Rhizobium meliloti RepID=F6EDG5_SINMK
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AAK65464.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_2493_curated_30
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33705..35240
DNA (1536bp) protein (512aa)
Trimethylamine methyltransferase; K14083 trimethylamine methyltransferase [EC:2.1.1.-]
Trimethylamine methyltransferase n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XEE2_SINMM
Trimethylamine methyltransferase {ECO:0000313|EMBL:CDH82058.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
Displaying items 1-30 of 78 in total

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