ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1136_curated_27

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: 23014..24015

Top 3 Functional Annotations

Value Algorithm Source
GGDEF family regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSV8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 293.0
  • Bit_score: 290
  • Evalue 2.10e-75
GGDEF family regulator {ECO:0000313|EMBL:EYR79177.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 293.0
  • Bit_score: 290
  • Evalue 2.90e-75
GGDEF domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 295.0
  • Bit_score: 210
  • Evalue 1.10e-51

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1002
TTGCTCACGAAAGAGTTTCCCAAAGGCATGTCGAAGGCTTCGAGCATCATTGCTGCCAGCACATATCCGACGAAACGACGCGAGCCCGAAACACCGGAAACGGCGGGCTCGCATTCCGCGTTTCCGGATGCCCTGCTTGCGGGCTTTGCTGCCAGCGGCGCTGCGATTGCCCTCTTCGATCCGGCCGACCGACTGGTCTTTACCTCCGAGGGCATGCGGCGGATCTACAATATCCAGCCGGACTGCGCCAGTTTCGACGACATCATGCGGCATTGTCATGCCACCCGCACCGGCCCGCGTTTTTCCGTCGACATCGAGACCTGGCTTTCCAATGCGCGGCAGAAGCGCCGCAGCGCGCCTTACCGTTCCTTCGAGATCGACATGGTCGACGGCAGTTGGTTCTGGTCGAGCGAAACCACCTATGACGGCGGCTGGGTGCTGCTGTTCGTCACCGACATCACGCCGCTGAAGACCAACGAGAGCCTGCTGCGGCTGGCGCGCGACCTCGCACAGCAGGCGGCCGACACCGATGCACTGACGGGCCTGCTCAATCGCCGCCACGTCATGTCGGTGTTTTCCTACAAGACGCTGGAAGCCGGCGAACGCGGCACCGCCTTGTCCGTCGCCCTCATCGACCTCGACCATTTCAAGACCATCAACGACCGTTTCGGCCATGCGGCCGGCGACAAGGTGCTCTGTCATTTCGCCGAACTGGCCAAGCAGAAGATCCGCGATACCGACACGCTCGCCCGCATCGGCGGCGAGGAATTCATGCTGTTGATGCCGGGGGTCCGGTTGCAACGCGCCGTCGACATCGTCGAACGCATTCGCGAGGCGGTCAGCCGTTCGACGCACGTCGCCGGCATCGACCTCTGCTATACGCTGTCCGCCGGGATTGCCGAATGCATCGGCGAATGCCCGGAAGAGCTGTTCCAGCGCGCCGACAAGGCGCTTTATCGCGCCAAGCAGGGCGGACGGAACCGCACGGAAGCCGCCCGCTGA
PROTEIN sequence
Length: 334
LLTKEFPKGMSKASSIIAASTYPTKRREPETPETAGSHSAFPDALLAGFAASGAAIALFDPADRLVFTSEGMRRIYNIQPDCASFDDIMRHCHATRTGPRFSVDIETWLSNARQKRRSAPYRSFEIDMVDGSWFWSSETTYDGGWVLLFVTDITPLKTNESLLRLARDLAQQAADTDALTGLLNRRHVMSVFSYKTLEAGERGTALSVALIDLDHFKTINDRFGHAAGDKVLCHFAELAKQKIRDTDTLARIGGEEFMLLMPGVRLQRAVDIVERIREAVSRSTHVAGIDLCYTLSAGIAECIGECPEELFQRADKALYRAKQGGRNRTEAAR*