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SCNpilot_expt_1000_bf_scaffold_1136_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1136_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..463
DNA (462bp) protein (154aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium sp. CF080 RepID=J2J0F4_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EUB95329.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1136_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(668..1084)
DNA (417bp) protein (139aa)
Polysaccharide deacetylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LK38_RHITR
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:AGB70469.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1433..1822)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIC4_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70466.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_4
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2025..3218
DNA (1194bp) protein (398aa)
Secreted protease C {ECO:0000313|EMBL:KFC63188.1}; EC=3.4.24.- {ECO:0000313|EMBL:KFC63188.1};; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000360FB75
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3347..5455
DNA (2109bp) protein (703aa)
ptrB; protease II protein (EC:3.4.21.83); K01354 oligopeptidase B [EC:3.4.21.83]
Protease II protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTN4_RHIE6
Peptidase S9 {ECO:0000313|EMBL:KDP76048.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_6
unknown

Not on your lists

5838..6185
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1136_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6300..6773
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2KUP5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95339.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6889..7314
DNA (426bp) protein (142aa)
Transcriptional regulator, MerR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGD4_RHITR
transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AGB70458.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7531..8019
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2TEJ1_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EUB95345.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1136_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8045..8617
DNA (573bp) protein (191aa)
Putative intracellular protease/amidase n=1 Tax=Rhizobium sp. CF142 RepID=J2L9K5_9RHIZ
Putative intracellular protease/amidase {ECO:0000313|EMBL:EJJ29734.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
ThiJ/PfpI family protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_11
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8703..9056)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H679_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KJF69575.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_12
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9053..9793)
DNA (741bp) protein (247aa)
cobalt transporter subunit CbtA n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D88B2
Cobalt transporter {ECO:0000313|EMBL:KJF73306.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Cobalt transporter subunit CbtA
SCNpilot_expt_1000_bf_scaffold_1136_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9809..9997)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y0G1_RHIRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHH03190.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10678..11592)
DNA (915bp) protein (305aa)
gluconate 2-dehydrogenase (acceptor) (EC:1.1.99.3)
Gluconate 2-dehydrogenase (Acceptor) {ECO:0000313|EMBL:ACS55268.1}; EC=1.1.99.3 {ECO:0000313|EMBL:ACS55268.1};; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
diacylglycerol kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI000369A329
SCNpilot_expt_1000_bf_scaffold_1136_curated_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11678..12115)
DNA (438bp) protein (146aa)
cytochrome C556 n=1 Tax=Rhizobium mongolense RepID=UPI0003B457CA
Cytochrome c-556 protein {ECO:0000313|EMBL:AJD40494.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
cycF; cytochrome C-556
SCNpilot_expt_1000_bf_scaffold_1136_curated_16
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12331..12972)
DNA (642bp) protein (214aa)
threonine transporter RhtB n=1 Tax=Rhizobium mongolense RepID=UPI0003B6341D
LysE family amino acid efflux protein {ECO:0000313|EMBL:AJD40493.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_1136_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13106..13807
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HKJ5_9RHIZ
Putative transcriptional regulatory protein {ECO:0000313|EMBL:AHK43732.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_18
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13839..14432)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QJV5_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EGF93212.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
ydeI; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14478..14924)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AFQ9_RHIRD
Transcriptional regulator, MarR family protein {ECO:0000313|EMBL:EMS97038.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Transcriptional regulator, MarR family protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14999..15727
DNA (729bp) protein (243aa)
Thioredoxin-like protein n=2 Tax=Rhizobium etli RepID=S5SFR1_RHIET
Thioredoxin-like protein {ECO:0000313|EMBL:AJC78443.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15894..16682
DNA (789bp) protein (263aa)
Lactoylglutathione lyase family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W2F9_RHILT
Lactoylglutathione lyase family protein {ECO:0000313|EMBL:EJC79911.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K06996
SCNpilot_expt_1000_bf_scaffold_1136_curated_22
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16731..18659)
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JTB4_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35827.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_23
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18775..19782)
DNA (1008bp) protein (336aa)
L-asparaginase II protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLW2_9RHIZ
L-asparaginase II protein {ECO:0000313|EMBL:EPE99579.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
L-asparaginase II
SCNpilot_expt_1000_bf_scaffold_1136_curated_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19930..20667
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A9F91
Uncharacterized protein {ECO:0000313|EMBL:AHK43702.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20656..21285)
DNA (630bp) protein (210aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2AYD6_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:AHF83026.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1136_curated_26
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21398..22822
DNA (1425bp) protein (475aa)
major facilitator transporter n=1 Tax=Rhizobium mongolense RepID=UPI0003B46089
Major facilitator superfamily protein {ECO:0000313|EMBL:AJD40425.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23014..24015
DNA (1002bp) protein (334aa)
GGDEF family regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSV8_9RHIZ
GGDEF family regulator {ECO:0000313|EMBL:EYR79177.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GGDEF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1136_curated_28
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24125..25126)
DNA (1002bp) protein (334aa)
Quinone oxidoreductase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZH8_9RHIZ
Quinone oxidoreductase protein {ECO:0000313|EMBL:ENN86121.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
quinone oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1136_curated_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25239..27068)
DNA (1830bp) protein (610aa)
diguanylate cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EA259
sensory box/GGDEF family protein
Putative sensory box/GGDEF family protein {ECO:0000313|EMBL:ACE90205.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1136_curated_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27265..27528)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003778055
hypothetical protein
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain {ECO:0000313|EMBL:EJC70069.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
Displaying items 1-30 of 41 in total

View Taxonomy