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SCNpilot_expt_1000_bf_scaffold_4786_curated_24

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(21551..22429)

Top 3 Functional Annotations

Value Algorithm Source
ABC-type proline/glycine betaine transport system, periplasmic component n=1 Tax=Rhizobium sp. CF122 RepID=J3BFJ2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 77.4
  • Coverage: 301.0
  • Bit_score: 492
  • Evalue 4.10e-136
ABC-type proline/glycine betaine transport system, periplasmic component {ECO:0000313|EMBL:EJL50461.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.4
  • Coverage: 301.0
  • Bit_score: 492
  • Evalue 5.70e-136
putative substrate-binding component of ABC transporter; K02002 glycine betaine/proline transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 284.0
  • Bit_score: 489
  • Evalue 8.30e-136

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Taxonomy

Rhizobium sp. CF122 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 879
ATGAAAAAACTGCTTGGCTCGACATGCCTGTTATTCGGAATTCTCGGAGGCACGTCGCTTGCTTCCGCATCGGAGTGCGGAAGCATCACGATCGCGAGCATGAACTGGCAGAGCGCGGAGGTCATCTCCAATCTCGACAAGCTCATCCTGAACGAGGGTTACGGCTGCAGCGCCGAGATCACCGTCGGCGACACGGTTCCGACGATCACCTCGATGGCCGAGAAGGGCGAACCGGACATCGCCCCGGAAGCCTGGATCGACCTTTTGCCCGACGTCGTCAAGAAAGGCACTGCGGAAGGTCGCATCGTCCAGGTCGGCTCGCCACTGCCGGATGGCGGCGTCCAGGGCTGGTGGATCCCCAAATATTTCGCCGACGCCCATCCCGACATCAAGTCCATACCCGACATGCTGAAGCATCCGGAACTCTTCCCCGATCCGGAGGATGCATCGAAGGGCGCCATCTTCAACGGCCCGCAGGGCTGGGGCGGCACCGTCGTCACTGCCCAGCTCTACAAGGCGTTCGAGGCCGACAAGGCCGGCTTCAACCTGATCGACACCGGTTCGGCCGCAGGCCTCGACGGCTCCATCGCCAAGGCCTATGAGCGCAAGCAGGCATGGGTCGGCTACTACTGGGCGCCGACGGCGCTGCTCGGCAAGTACGAGATGGTCCGCCTCGACTACGGCGTCGGCGAGGACGCGGCCGAATGGAAGCGCTGCAACACCGTTGCCGATTGCCCCGATCCCAAGCCGAATGCCTGGCCGGTCGACACCATCGTCANNNNNNNNNNNNNNNAAAACCCTTCTCGGAAAAAGCCGGCCCGGAGGTCATGGACTATCTCAAGAAGCGCTCCTGGAGCAACCAGACGCTCGGCCAGCTGA
PROTEIN sequence
Length: 293
MKKLLGSTCLLFGILGGTSLASASECGSITIASMNWQSAEVISNLDKLILNEGYGCSAEITVGDTVPTITSMAEKGEPDIAPEAWIDLLPDVVKKGTAEGRIVQVGSPLPDGGVQGWWIPKYFADAHPDIKSIPDMLKHPELFPDPEDASKGAIFNGPQGWGGTVVTAQLYKAFEADKAGFNLIDTGSAAGLDGSIAKAYERKQAWVGYYWAPTALLGKYEMVRLDYGVGEDAAEWKRCNTVADCPDPKPNAWPVDTIVXXXXXXNPSRKKPARRSWTISRSAPGATRRSAS*