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SCNpilot_expt_1000_bf_scaffold_4786_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4786_curated_1
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..206)
DNA (204bp) protein (68aa)
ABC transporter permease n=1 Tax=Nitratireductor indicus C115 RepID=K2NXD6_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:EKF42549.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ABC transporter permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(667..1683)
DNA (1017bp) protein (339aa)
iron ABC transporter permease n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A3CF6A
Petrobactin ABC transporter permease I {ECO:0000313|EMBL:EKF42548.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
transport system permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_3
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1683..2606)
DNA (924bp) protein (308aa)
Iron-siderophore ABC transporter n=1 Tax=Nitratireductor indicus C115 RepID=K2PN96_9RHIZ
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEQ04525.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2786..3463)
DNA (678bp) protein (226aa)
Exogenous ferric siderophore receptor n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BKG6_RHIRD
Exogenous ferric siderophore receptor {ECO:0000313|EMBL:EMS99650.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Outer membrane receptor for ferrienterochelin and colicins
SCNpilot_expt_1000_bf_scaffold_4786_curated_5
unknown

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4293..4475
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4786_curated_6
unknown

Not on your lists

comp(5040..6185)
DNA (1146bp) protein (382aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4786_curated_7
unknown

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comp(7109..7324)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4786_curated_8
bacterium YEK0313, Bacteria

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7983..8927
DNA (945bp) protein (315aa)
TonB-dependent receptor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M5Z8_9RHIZ
Pesticin receptor {ECO:0000313|EMBL:CEJ14753.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_4786_curated_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8927..10126
DNA (1200bp) protein (400aa)
Major facilitator superfamily transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N346_9RHIZ
Major facilitator superfamily transporter {ECO:0000313|EMBL:EKF18618.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
major facilitator superfamily transporter
SCNpilot_expt_1000_bf_scaffold_4786_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10123..10791
DNA (669bp) protein (223aa)
type 12 methyltransferase; K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
Type 12 methyltransferase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LLI7_9RHIZ
Type 12 methyltransferase {ECO:0000313|EMBL:EKF18619.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_4786_curated_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10871..11395
DNA (525bp) protein (175aa)
TetR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M948_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:EKF18621.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4786_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11520..12047
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7Q4_AGRRK
VirR {ECO:0000313|EMBL:KGD86516.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_13
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12055..12264)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Rhizobium gallicum RepID=UPI000376C663
Molybdopterin binding protein {ECO:0000313|EMBL:EPE99976.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
molybdo-pterin binding protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12490..13200
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000371147B
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:EJJ24629.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
tyrosine/serine protein phosphatase
SCNpilot_expt_1000_bf_scaffold_4786_curated_15
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13232..13819)
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RRA0_RHORT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC23345.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_1000_bf_scaffold_4786_curated_16
unknown

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14108..14347
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4786_curated_17
unknown

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14474..14650
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4786_curated_18
unknown

Not on your lists

14669..14830
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4786_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15091..15990
DNA (900bp) protein (300aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036B7DBE
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03857.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_4786_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16483..17286)
DNA (804bp) protein (268aa)
putative malate dehydrogenase protein (EC:1.1.1.37)
Putative malate dehydrogenase protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2JYL8_RHIEC
Malate dehydrogenase {ECO:0000313|EMBL:KDP72593.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_4786_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17288..17917)
DNA (630bp) protein (210aa)
stcD1; N-methylproline demethylase StcD (EC:1.-.-.-)
oxidoreductase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003720957
Oxidoreductase {ECO:0000313|EMBL:KDP72594.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_4786_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20309..21196)
DNA (888bp) protein (296aa)
ABC-type proline/glycine betaine transport system, permease component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CY81_RHILT
ABC transporter permease {ECO:0000313|EMBL:KDP72596.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
glycine betaine/L-proline ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21423..21602)
DNA (180bp) protein (60aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VVA5_9RHIZ
amino acid ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP72597.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_4786_curated_24
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21551..22429)
DNA (879bp) protein (293aa)
ABC-type proline/glycine betaine transport system, periplasmic component n=1 Tax=Rhizobium sp. CF122 RepID=J3BFJ2_9RHIZ
ABC-type proline/glycine betaine transport system, periplasmic component {ECO:0000313|EMBL:EJL50461.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
putative substrate-binding component of ABC transporter; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4786_curated_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22497..23297)
DNA (801bp) protein (267aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
pyrroline-5-carboxylate reductase n=1 Tax=Rhizobium gallicum RepID=UPI00035FEBB8
putative pyrroline-5-carboxylate reductase
SCNpilot_expt_1000_bf_scaffold_4786_curated_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23305..23934)
DNA (630bp) protein (210aa)
Putative TetR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLF0_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KDP72599.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4786_curated_27
unknown

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comp(25265..25465)
DNA (201bp) protein (67aa)

This feature has no annotations

Displaying 27 items

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