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SCNpilot_expt_1000_bf_scaffold_887_curated_31

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(34163..34405)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Rhizobium RepID=UPI00030756F2 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 80.0
  • Bit_score: 159
  • Evalue 1.30e-36
hfq; RNA chaperone Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 80.0
  • Bit_score: 159
  • Evalue 4.20e-37
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 80.0
  • Bit_score: 159
  • Evalue 1.90e-36

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Taxonomy

Rhizobium sp. LPU83 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 243
ATGGCGGAACGTTCTCAGAATTTGCAGGACTTGTTTCTCAATACTGTACGCAAGCAAAAGATTTCACTGACGATATTTCTCATCAACGGCGTTAAACTGACAGGCGTCGTTACCTCTTTCGACAACTTCTGCGTTCTGTTGCGTCGTGACGGCCACTCGCAGCTCGTCTACAAGCACGCAATCTCGACCATCATGCCTGGCCAGCCGATGCAGATGTTCGAGAGCGAAGAAGCCGCATCCTGA
PROTEIN sequence
Length: 81
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPGQPMQMFESEEAAS*