ggKbase home page

SCNpilot_expt_1000_bf_scaffold_887_curated

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_887_curated_1
unknown

Not on your lists

2..571
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_887_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(662..1621)
DNA (960bp) protein (320aa)
UPI0003D00C9A related cluster n=1 Tax=unknown RepID=UPI0003D00C9A
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR81070.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lysR; transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_887_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1765..3162
DNA (1398bp) protein (466aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Amidase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRG4_9RHIZ
Amidase family protein {ECO:0000313|EMBL:EYR81069.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_887_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3233..4498
DNA (1266bp) protein (422aa)
Branched-chain amino acid ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW34_9RHIZ
ABC-type branched-chain amino acid transport systemperiplasmic component {ECO:0000313|EMBL:EYR81068.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
branched-chain amino acid ABC transporter periplasmic branched-chain amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_887_curated_5
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4572..5372
DNA (801bp) protein (267aa)
ABC transporter related n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FLU4_9RHIZ
ABC transporter related {ECO:0000313|EMBL:CCV15079.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_887_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5369..6094
DNA (726bp) protein (242aa)
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FG25_9RHIZ
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:EYR81066.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_887_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6098..6988
DNA (891bp) protein (297aa)
Inner-membrane translocator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN37_9RHIZ
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:EYR81065.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_887_curated_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6998..8071
DNA (1074bp) protein (358aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFC0_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:CCV15076.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_887_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8087..9670
DNA (1584bp) protein (528aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR81063.1}; EC=1.1.99.- {ECO:0000313|EMBL:EYR81063.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQ20_9RHIZ
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_887_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9713..10819
DNA (1107bp) protein (369aa)
Histone deacetylase-like amidohydrolase HdaH {ECO:0000313|EMBL:EYR81061.1}; EC=3.5.1.- {ECO:0000313|EMBL:EYR81061.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Histone deacetylase-like amidohydrolase HdaH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX76_9RHIZ
histone deacetylase superfamily protein
SCNpilot_expt_1000_bf_scaffold_887_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10907..11566)
DNA (660bp) protein (220aa)
Outer membrane protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JFY2_9RHIZ
Outer membrane protein {ECO:0000313|EMBL:EYR80558.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
outer membrane protein; K07275 outer membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_887_curated_12
unknown

Not on your lists

comp(11772..12215)
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_887_curated_13
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12363..13646
DNA (1284bp) protein (428aa)
hemolysin secretion protein D n=1 Tax=Rhizobium mongolense RepID=UPI0003B416D8
RND family efflux transporter protein {ECO:0000313|EMBL:AJD41198.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
protein secretion protein, HylD family; K02005 HlyD family secretion protein
SCNpilot_expt_1000_bf_scaffold_887_curated_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13660..14373
DNA (714bp) protein (238aa)
ABC transporter nucleotide-binding protein/ATPase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QAB8_9RHIZ
ABC transporter nucleotide-binding protein/ATPase {ECO:0000313|EMBL:EKF57996.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_887_curated_15
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14363..15568
DNA (1206bp) protein (402aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J1SZT1_9RHIZ
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK69405.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein; K02004 putative ABC transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_887_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15575..17089)
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037BCBE2
Peptidase C14, caspase catalytic subunit p20 {ECO:0000313|EMBL:EYR80010.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptidase S1/S6 family chymotrypsin-type protein
SCNpilot_expt_1000_bf_scaffold_887_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17089..18603)
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035C4F00
Uncharacterized protein {ECO:0000313|EMBL:EYR80011.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_887_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18605..19507)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2D7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80012.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_887_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19518..22766)
DNA (3249bp) protein (1083aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003729083
Diheme cytochrome c-type {ECO:0000313|EMBL:AHK44215.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
WD-40 repeat-containing regulatory protein
SCNpilot_expt_1000_bf_scaffold_887_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22811..24073)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035FEB7A
Oxidoreductase FAD/NAD(P)-binding protein {ECO:0000313|EMBL:EYR80014.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase, flavocytochrome subunit
SCNpilot_expt_1000_bf_scaffold_887_curated_21
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24473..25096
DNA (624bp) protein (208aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036A46CB
GntR family transcriptional regulator protein {ECO:0000313|EMBL:AJD41202.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_887_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25151..25963)
DNA (813bp) protein (271aa)
mvrA; ferredoxin NADP+ reductase (EC:1.18.1.2); K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Ferredoxin NADP+ reductase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UA06_RHIRD
Ferredoxin NADP+ reductase {ECO:0000313|EMBL:CDN90963.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_887_curated_23
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26138..26689)
DNA (552bp) protein (184aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037C5ACE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJD41185.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_887_curated_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26661..28334)
DNA (1674bp) protein (558aa)
cysI; sulfite reductase (NADPH) protein; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
Sulfite reductase (NADPH) protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JF14_AGRRK
Sulfite reductase (NADPH) protein {ECO:0000313|EMBL:ACM26505.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_887_curated_25
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28342..28656)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3F087
Uncharacterized protein {ECO:0000313|EMBL:AJD41183.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_887_curated_26
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28658..30103)
DNA (1446bp) protein (482aa)
Siroheme synthase {ECO:0000313|EMBL:AIC27224.1}; EC=4.99.1.4 {ECO:0000313|EMBL:AIC27224.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
cysG; uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
siroheme synthase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036BCA8A
SCNpilot_expt_1000_bf_scaffold_887_curated_27
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30342..30929
DNA (588bp) protein (196aa)
Uroporphyrin-III C-methyltransferase n=1 Tax=Rhizobium sp. LPU83 RepID=G3GMT7_9RHIZ
Guanine/cytosine deaminase {ECO:0000313|EMBL:EPE98574.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
deoxycytidylate deaminase family protein
SCNpilot_expt_1000_bf_scaffold_887_curated_28
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30964..31797
DNA (834bp) protein (278aa)
mazG; nucleoside triphosphate pyrophosphohydrolase; K04765 ATP diphosphatase [EC:3.6.1.8]
Nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PNZ5_9RHIZ
Nucleoside triphosphate pyrophosphohydrolase {ECO:0000313|EMBL:CCM75593.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_expt_1000_bf_scaffold_887_curated_29
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32006..32566
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCF9_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH87771.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_887_curated_30
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32742..34085)
DNA (1344bp) protein (448aa)
GTPase HflX n=1 Tax=Rhizobium sp. RepID=L0NGD2_RHISP
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hflX; GTP-binding protein; K03665 GTP-binding protein HflX
Displaying items 1-30 of 54 in total

View Taxonomy