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SCNpilot_expt_1000_bf_scaffold_5419_curated_5

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(2805..3020)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein n=9 Tax=Rhizobium/Agrobacterium group RepID=A9CI66_AGRT5 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 71.0
  • Bit_score: 146
  • Evalue 1.30e-32
cspA; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 71.0
  • Bit_score: 146
  • Evalue 4.20e-33
Cold shock protein {ECO:0000313|EMBL:CDN92466.1}; Cold shock-like protein cspG CPS-G {ECO:0000313|EMBL:KJX87795.1}; Cold-shock protein {ECO:0000313|EMBL:KAJ34720.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 71.0
  • Bit_score: 146
  • Evalue 1.90e-32

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 216
ATGGCCGAAACTGGCACTGTAAAATTCTTCAACACCGACAAAGGCTTCGGCTTCATCAAGCCGGACAATGGCGGCGCGGATATCTTCGTACACATTTCTGCCGTGCAGGCATCCGGCCTCTCGGGACTGTCGGAAAACCAGAAGGTAAGCTTCGACACGGAACCGGATCGTCGCGGCAAGGGCCCGAAGGCCGTCAATCTGCAGATCGCCGGCTGA
PROTEIN sequence
Length: 72
MAETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGKGPKAVNLQIAG*