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SCNpilot_expt_1000_bf_scaffold_5419_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5419_curated_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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106..999
DNA (894bp) protein (298aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:AJD41959.1}; EC=2.6.1.42 {ECO:0000313|EMBL:AJD41959.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
branched-chain amino acid aminotransferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B5644E
SCNpilot_expt_1000_bf_scaffold_5419_curated_2
unknown

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1173..1349
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5419_curated_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1514..2161
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTV0_9RHIZ
Putative metal-binding hydrolase {ECO:0000313|EMBL:CCM76639.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_5419_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2231..2656)
DNA (426bp) protein (142aa)
BA14K-like protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KJ06_RHILT
BA14K-like protein {ECO:0000313|EMBL:AIC28347.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5419_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2805..3020)
DNA (216bp) protein (72aa)
Cold shock protein n=9 Tax=Rhizobium/Agrobacterium group RepID=A9CI66_AGRT5
cspA; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold shock protein {ECO:0000313|EMBL:CDN92466.1}; Cold shock-like protein cspG CPS-G {ECO:0000313|EMBL:KJX87795.1}; Cold-shock protein {ECO:0000313|EMBL:KAJ34720.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_5419_curated_6
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3681..4334)
DNA (654bp) protein (218aa)
sortase; K07284 sortase A [EC:3.4.22.70]
Sortase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HIF7_9RHIZ
Sortase {ECO:0000313|EMBL:EPE97855.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_5419_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4337..6661)
DNA (2325bp) protein (775aa)
membrane protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035F3463
transmembrane protein; K07114 uncharacterized protein
Putative transmembrane protein {ECO:0000313|EMBL:CAK08932.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_5419_curated_8
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7130..8332
DNA (1203bp) protein (401aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CCM76647.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CCM76647.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
aatA-1; aspartate aminotransferase A 1 (EC:2.6.1.1)
aspartate aminotransferase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000381290F
SCNpilot_expt_1000_bf_scaffold_5419_curated_9
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8396..9421)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZ13_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM37259.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_5419_curated_10
unknown

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comp(9578..9943)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5419_curated_11
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9915..11060)
DNA (1146bp) protein (382aa)
Ca2+/H+ antiporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q894_9RHIZ
Ca2+/H+ antiporter {ECO:0000313|EMBL:EKF59999.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
Ca2+/H+ antiporter
SCNpilot_expt_1000_bf_scaffold_5419_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11279..11539
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VV23_RHILT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJB07440.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_5419_curated_13
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11855..12967)
DNA (1113bp) protein (371aa)
NADH:flavin oxidoreductase, Old Yellow Enzyme family n=4 Tax=Rhizobium meliloti RepID=M4IEY4_RHIML
NADH:flavin oxidoreductase, Old Yellow Enzyme family
Putative glycerol trinitrate (GTN) reductase protein {ECO:0000313|EMBL:AEH79264.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_5419_curated_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13021..13323)
DNA (303bp) protein (101aa)
ArsR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000372A4DA
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:EHK77173.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
Displaying 14 items

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