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SCNpilot_expt_1000_bf_scaffold_3168_curated_6

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(4127..4336)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein n=1 Tax=Rhizobium sp. CF142 RepID=J1ST51_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.5
  • Coverage: 69.0
  • Bit_score: 128
  • Evalue 2.80e-27
Cold shock protein {ECO:0000313|EMBL:EJJ28438.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.5
  • Coverage: 69.0
  • Bit_score: 128
  • Evalue 4.00e-27
cspA2; Cold shock protein, DNA binding similarity KEGG
DB: KEGG
  • Identity: 85.5
  • Coverage: 69.0
  • Bit_score: 127
  • Evalue 1.50e-27

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Taxonomy

Rhizobium sp. CF142 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGAATACAGGTACCGTAAAGTGGTTTAACAGCACCAAGGGTTTTGGTTTCATCCAGCCTGACAACGGCGGCACGGATGTCTTCGTTCACATTTCGGCTGTCGAGCGTTCCGGAATTCGCAACCTCATCGAAGGCCAGAAGCTCCGTTACGACATCGTTCAGGACCGCCGTTCGGGCAAGAATTCTGCGGACAATCTGCAAGCTGCCTAA
PROTEIN sequence
Length: 70
MNTGTVKWFNSTKGFGFIQPDNGGTDVFVHISAVERSGIRNLIEGQKLRYDIVQDRRSGKNSADNLQAA*