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SCNpilot_expt_1000_bf_scaffold_3168_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3168_curated_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(273..767)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HT71_9RHIZ
Two component sensor kinase {ECO:0000313|EMBL:CDN47469.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
two component sensor kinase
SCNpilot_expt_1000_bf_scaffold_3168_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1276..2145
DNA (870bp) protein (290aa)
rLmB; 23S rRNA (guanosine-2'-O-)-methyltransferase (EC:2.1.1.-); K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2''''-O-)-methyltransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI000373922A
RNA methyltransferase {ECO:0000313|EMBL:AGB70860.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3168_curated_3
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2260..3003)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DXC8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT07089.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3168_curated_4

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comp(3519..3728)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W985_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU10705.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3168_curated_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3749..3997)
DNA (249bp) protein (83aa)
30S ribosomal protein S21 n=1 Tax=Rhizobium sp. RepID=L0NF12_RHISP
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
30S ribosomal protein S21
SCNpilot_expt_1000_bf_scaffold_3168_curated_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4127..4336)
DNA (210bp) protein (70aa)
Cold shock protein n=1 Tax=Rhizobium sp. CF142 RepID=J1ST51_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EJJ28438.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
cspA2; Cold shock protein, DNA binding
SCNpilot_expt_1000_bf_scaffold_3168_curated_7
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4996..5769
DNA (774bp) protein (258aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYQ3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3168_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5766..6275
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT41_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82295.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3168_curated_9
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6359..6763)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZKJ0_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB80182.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_expt_1000_bf_scaffold_3168_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7018..8046)
DNA (1029bp) protein (343aa)
Peptide chain release factor 2 n=1 Tax=Rhizobium etli CNPAF512 RepID=F2ADS8_RHIET
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2
SCNpilot_expt_1000_bf_scaffold_3168_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8255..9439)
DNA (1185bp) protein (395aa)
Penicillin-binding protein 1A {ECO:0000313|EMBL:EYR82293.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR82293.1};; EC=3.4.-.- {ECO:0000313|EMBL:EYR82293.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mrcA1; penicillin-binding 1A transmembrane protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein 1A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUS6_9RHIZ
Displaying 11 items

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