ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2009_curated_20

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(17649..18422)

Top 3 Functional Annotations

Value Algorithm Source
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 63.0
  • Coverage: 257.0
  • Bit_score: 321
  • Evalue 8.40e-85
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.0
  • Coverage: 257.0
  • Bit_score: 321
  • Evalue 1.20e-84
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 59.5
  • Coverage: 257.0
  • Bit_score: 299
  • Evalue 1.10e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 774
ATGAAAAGCGTTGATCCCATCGTCGATACCGATCTGGCCGCCTATGTCGATAACCAGCTCGGCATCAATCGCCGCATCGAAGTCGAGGCCTATCTCTCCGAAAATCCGCAGATCGCGGCGCAGGTGATGGCCGACCTCAGCCTCAAGGGCGAATTGCGACTGGCGCTCGCCGACCAGAGCAGGGCGGCGCGCCCGCAGACCCGCGATGCCGCGCGGCGGCTCGAAGGCGCGCTGTCGCGCGGCCGCTTCTTCTCGACCCTGCGCCGGGCCGCGGCCGTGATCCTGCTGATCGCCACCGGCTGGCTGGCCAATGCCTATGTCGGGCCGTTCGGGGCGACCAGCGTCGTCGCCTCTGTGCAGCCGCCGGCTTTCGTCGAGGAGGCCGTTCGCGCCCACCAGACGACGCTGCTGCGCGAAACCATGCACTCGCAGCGCGAGACCGCCGATTACGATCCCAACGACATCCGCGCCGCGACCGGCATCGTCATGCCCGCTGTTCCCAAGGGCTGGCGGGTGATGGACGTGCAGATCTTCCCCTCCGCCTTCGGCCCCAGCGTCGAAATGGCGGTCTCCCCCGGCAAGGGCGAAGTCTTGTCGCTCTTTGCCGTGCGCCCTGGCAATTTCACCGTACAGCAGGCCCTGCCCTTCGCCAGCGGCGTGACGCAGGCGTCCTACTGGCAGATCGGCGAGGTGGCGTACGCCCTGGTTTCAGACACCCGCAAGGCCAACGAACTCAACGGCATAGCCCAGAAGCTCGCCGGCTCGCTCTACTGA
PROTEIN sequence
Length: 258
MKSVDPIVDTDLAAYVDNQLGINRRIEVEAYLSENPQIAAQVMADLSLKGELRLALADQSRAARPQTRDAARRLEGALSRGRFFSTLRRAAAVILLIATGWLANAYVGPFGATSVVASVQPPAFVEEAVRAHQTTLLRETMHSQRETADYDPNDIRAATGIVMPAVPKGWRVMDVQIFPSAFGPSVEMAVSPGKGEVLSLFAVRPGNFTVQQALPFASGVTQASYWQIGEVAYALVSDTRKANELNGIAQKLAGSLY*