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SCNpilot_expt_1000_bf_scaffold_2009_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2009_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ0_9RHIZ
FHA domain-containing protein {ECO:0000313|EMBL:EYR83989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative type VI secretion protein, FHA domain-containing; K11894 type VI secretion system protein ImpI
SCNpilot_expt_1000_bf_scaffold_2009_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(551..1630)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037228F1
Methyltransferase domain-containing protein {ECO:0000313|EMBL:EYR83988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1643..1882)
DNA (240bp) protein (80aa)
PAAR repeat-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83987.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2278..3519
DNA (1242bp) protein (414aa)
Anti-anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFR6_9RHIZ
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
btrV; anti-sigma factor antagonist btrV
SCNpilot_expt_1000_bf_scaffold_2009_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4207..4779
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_2009_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4734..6386
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_2009_curated_7
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6448..6924
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJR65020.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
SCNpilot_expt_1000_bf_scaffold_2009_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6983..9073
DNA (2091bp) protein (697aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83982.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9085..9696
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83981.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9850..10986
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTW3_9RHIZ
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:EYR83980.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
impA-related N-terminal protein; K11902 type VI secretion system protein ImpA
SCNpilot_expt_1000_bf_scaffold_2009_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11043..11552
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYG0_9RHIZ
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EYR83979.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
SCNpilot_expt_1000_bf_scaffold_2009_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11556..13049
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
SCNpilot_expt_1000_bf_scaffold_2009_curated_13
unknown

Not on your lists

comp(12928..14217)
DNA (1290bp) protein (430aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2009_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14264..14590
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11899 type VI secretion system protein ImpD
SCNpilot_expt_1000_bf_scaffold_2009_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14592..15047
DNA (456bp) protein (152aa)
Type VI secretion system lysozyme-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG6_9RHIZ
Type VI secretion system lysozyme-like protein {ECO:0000313|EMBL:EYR83976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
SCNpilot_expt_1000_bf_scaffold_2009_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15064..15486)
DNA (423bp) protein (141aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhizobium sp. CF142 RepID=J1SS38_9RHIZ
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJJ28038.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
response regulator protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15812..16114)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000365880A
Uncharacterized protein {ECO:0000313|EMBL:CDX45491.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16244..16867)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TL90_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK53528.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_2009_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16895..17611)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRM2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78719.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
integral membrane protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17649..18422)
DNA (774bp) protein (258aa)
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18409..18954)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor n=1 Tax=Rhizobium leguminosarum RepID=UPI0003653422
EcfR {ECO:0000313|EMBL:ABO31341.1}; TaxID=386 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2009_curated_22
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19289..20215
DNA (927bp) protein (309aa)
membrane protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035D5DD9
Uncharacterized protein {ECO:0000313|EMBL:GAK72434.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_2009_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20259..21992)
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035F9938
Uncharacterized protein {ECO:0000313|EMBL:EPR19607.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21999..22667)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI0003764B56
Uncharacterized protein {ECO:0000313|EMBL:EYR83003.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22667..23713)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035DABF3
Uncharacterized protein {ECO:0000313|EMBL:EPR19624.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
phage shock protein A, PspA
SCNpilot_expt_1000_bf_scaffold_2009_curated_26
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24059..25090
DNA (1032bp) protein (344aa)
transporter n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000369077A
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEC76989.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
ribose ABC transporter substrate binding protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25178..26734
DNA (1557bp) protein (519aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
ABC transporter-like protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
D-ribose transporter ATP binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035C4454
SCNpilot_expt_1000_bf_scaffold_2009_curated_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27359..27742
DNA (384bp) protein (128aa)
ABC transporter permease n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003660287
Putative permease component of ABC transporter {ECO:0000313|EMBL:AHK46133.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative permease component of ABC transporter; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2009_curated_29
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27745..28755
DNA (1011bp) protein (337aa)
Transcriptional regulator, DeoR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B5K8_RHILS
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ACS59366.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2009_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28752..29747
DNA (996bp) protein (332aa)
Aldoketo reductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JIU4_AGRRK
aldoketo reductase
Aldoketo reductase protein {ECO:0000313|EMBL:ACM29836.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Displaying items 1-30 of 42 in total

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