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SCNpilot_expt_1000_bf_scaffold_2009_curated_4

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: 2278..3519

Top 3 Functional Annotations

Value Algorithm Source
Anti-anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFR6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 79.8
  • Coverage: 109.0
  • Bit_score: 175
  • Evalue 1.60e-40
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.8
  • Coverage: 109.0
  • Bit_score: 175
  • Evalue 2.20e-40
btrV; anti-sigma factor antagonist btrV similarity KEGG
DB: KEGG
  • Identity: 43.1
  • Coverage: 109.0
  • Bit_score: 97
  • Evalue 7.60e-18

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1242
GTGGGCGTTGCCATCCTTGTAGCCGTAATTGACCGCATTGGTAAGAATTTCGTCCAGGGCGACGTCCAGCCCGGCAACCGCCTCCTCGTCGAGCGACTGGCGCAGGAAGAAGCGGCCGATATCCTCCAGCAACGGCGGAATTCCGGCGAGATCGTTGGTCATGACGAAGGTGGCCGACCTGTTCGACTTCGCGGCGGTCTTGTAGAGGACCGCGCAGCCCACGCCCGCGGAGTCCTGCAGGGCGGGCTTTACCAGCCCTTCCAGCCCCTCGATCGGCATCTTGTCGTCAGAAAGGCCCGGCATTTCACCCGCCGTCAGCCACAGGATGCTGCCGGGCGTGACCGAGGGACCGTCGAACGCCTCCGTCCCGTCGCCGAGACGGGCGCCTGCCTCGCCCTTCGTCGCGATGCTCACCTGGCCGGAGACAACATCGAGGCGGGCCAGGGCGGCGTCGAACCGGATCTGCGGCGCCAGGTCGGCAACCGTTGCAAGCACAGCGTGCGGATCGCTGATTCGCGTCAGCAGCGCTCGCAGCATCTGGCGGAGGCCGGAGGCCGTCCAGGCGCCGTCGAGGCCGGTCTGGTGCACGCGGATGGCGGCCGCGGCAAAGATCTGCGTTTCCACCCAAATATGGTCGTAGAAAGAAACCGTGGTGTTTGCGGAACCGATGCCGGATTCCACTTCCAGGTCGCGCCGCACCGGAAACCGCGGCGGCAAAAGGGCCCGCTGCATCAGTCCGGCCAGGTCGTGGCGCAGGGAATCAGCGCTTGTCATCGATGTCGTTCCCCTCTCATGCTTGAAAAACATTCTGGCGCGTGGCGCCACTTTCTGAAATCATTACGGGCCATAATGCTGCGGTTCGTCACGCGGGCCGTTTCCCGATCAAGTGTGAATAACGAGGGTACCAACGCCATGAACATCGCCGAGACTCGCCGAGAGGGCAACCTTATTGTTTCGCCGAACGGCAGAATAGACAGCATGACGTCAGGCGTGTTCGATCGCCATCTCGCCGCCGTCATCGATCGGGGTGATACCAACATCATCGTCGATCTCGCCGGGCTGGAATATATCAGCAGCACCGGACTCTCCGTGTTTTTGTCGGCTGCAAAGAAGATCCGTGCAACCGGAGGGCGAATGGCGCTGACCGGTCTTAACAGCCGTATCCGTTTGGTATTCGAAATGAGTGGTTTCTTAAGGCTATTTCCGATTTATCCGACGGTGGACGCGGCCCTCGCCGGATGA
PROTEIN sequence
Length: 414
VGVAILVAVIDRIGKNFVQGDVQPGNRLLVERLAQEEAADILQQRRNSGEIVGHDEGGRPVRLRGGLVEDRAAHARGVLQGGLYQPFQPLDRHLVVRKARHFTRRQPQDAAGRDRGTVERLRPVAETGACLALRRDAHLAGDNIEAGQGGVEPDLRRQVGNRCKHSVRIADSRQQRSQHLAEAGGRPGAVEAGLVHADGGRGKDLRFHPNMVVERNRGVCGTDAGFHFQVAPHRKPRRQKGPLHQSGQVVAQGISACHRCRSPLMLEKHSGAWRHFLKSLRAIMLRFVTRAVSRSSVNNEGTNAMNIAETRREGNLIVSPNGRIDSMTSGVFDRHLAAVIDRGDTNIIVDLAGLEYISSTGLSVFLSAAKKIRATGGRMALTGLNSRIRLVFEMSGFLRLFPIYPTVDAALAG*