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SCNpilot_bf_inoc_scaffold_485_curated

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Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_485_curated_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(260..1471)
DNA (1212bp) protein (404aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLH3_9GAMM
SCNpilot_bf_inoc_scaffold_485_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1657..3099
DNA (1443bp) protein (481aa)
Metalloendopeptidase-like membrane protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NTT7_9GAMM
metalloendopeptidase-like membrane protein
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:AGG90896.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_485_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3113..4231
DNA (1119bp) protein (373aa)
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPM2_9GAMM
molecular chaperone
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_485_curated_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4238..4537)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1S7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX15399.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_485_curated_5
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4656..5909)
DNA (1254bp) protein (418aa)
Muropeptide transporter n=2 Tax=Alcaligenes RepID=M5IZE9_9BURK
Muropeptide transporter {ECO:0000313|EMBL:GAN45190.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ampG; muropeptide transporter; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
SCNpilot_bf_inoc_scaffold_485_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5899..6666)
DNA (768bp) protein (256aa)
Exodeoxyribonuclease III n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLH9_9GAMM
Exodeoxyribonuclease III {ECO:0000313|EMBL:EIL88070.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
exodeoxyribonuclease III
SCNpilot_bf_inoc_scaffold_485_curated_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6705..7199
DNA (495bp) protein (165aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLI0_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL88071.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
GCN5-like N-acetyltransferase
SCNpilot_bf_inoc_scaffold_485_curated_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7211..7858
DNA (648bp) protein (216aa)
orotate phosphoribosyltransferase n=1 Tax=Dyella japonica RepID=UPI00030B69C2
orotate phosphoribosyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_485_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7966..8613
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBX8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96969.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_485_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..10989)
DNA (2331bp) protein (777aa)
Phosphomannomutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW4_9GAMM
phosphomannomutase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_485_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11051..11518)
DNA (468bp) protein (156aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Dyella ginsengisoli RepID=UPI000344DCEB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_485_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11515..12720)
DNA (1206bp) protein (402aa)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:EIL96972.1}; EC=6.3.2.5 {ECO:0000313|EMBL:EIL96972.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY1_9GAMM
SCNpilot_bf_inoc_scaffold_485_curated_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12820..13491
DNA (672bp) protein (224aa)
DNA repair protein radc n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKW2_9GAMM
DNA repair protein radc {ECO:0000313|EMBL:EIL87853.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA repair protein
SCNpilot_bf_inoc_scaffold_485_curated_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14031..15743
DNA (1713bp) protein (571aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4EE6
SCNpilot_bf_inoc_scaffold_485_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15743..16447
DNA (705bp) protein (235aa)
Cell division protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY4_9GAMM
Cell division protein {ECO:0000313|EMBL:EIL96975.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell division protein
SCNpilot_bf_inoc_scaffold_485_curated_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16473..17225
DNA (753bp) protein (251aa)
Oxidoreductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY5_9GAMM
Oxidoreductase {ECO:0000313|EMBL:EIL96976.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
short-chain alcohol dehydrogenase
SCNpilot_bf_inoc_scaffold_485_curated_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17262..18455)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87849.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K07001 NTE family protein rbh
SCNpilot_bf_inoc_scaffold_485_curated_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18460..19203)
DNA (744bp) protein (248aa)
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
acetoacetate decarboxylase (EC:4.1.1.4); K01574 acetoacetate decarboxylase [EC:4.1.1.4]
acetoacetate decarboxylase n=1 Tax=Dyella japonica RepID=UPI0003116042
SCNpilot_bf_inoc_scaffold_485_curated_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19280..20065)
DNA (786bp) protein (262aa)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:AIF46275.1}; EC=1.1.1.30 {ECO:0000313|EMBL:AIF46275.1};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-hydroxybutyrate dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002D26F82
3-hydroxybutyrate dehydrogenase
SCNpilot_bf_inoc_scaffold_485_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20180..22066)
DNA (1887bp) protein (629aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
arginine decarboxylase (EC:4.1.1.19)
Biosynthetic arginine decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGX2_9GAMM
SCNpilot_bf_inoc_scaffold_485_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22273..23127
DNA (855bp) protein (285aa)
spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGX3_9GAMM
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_485_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23173..23367)
DNA (195bp) protein (65aa)
NusB antitermination factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPN8_9GAMM
NusB antitermination factor {ECO:0000313|EMBL:EIL89179.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_485_curated_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23531..24568
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87844.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_485_curated_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24618..25253
DNA (636bp) protein (212aa)
Partition protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV2_9GAMM
Partition protein {ECO:0000313|EMBL:EIL87843.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase involved in chromosome partitioning
SCNpilot_bf_inoc_scaffold_485_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25291..25764
DNA (474bp) protein (158aa)
Phosphohistidine phosphatase SixA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBZ3_9GAMM
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EIL96984.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphohistidine phosphatase SixA
SCNpilot_bf_inoc_scaffold_485_curated_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25872..27761
DNA (1890bp) protein (630aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=2 Tax=Rhodanobacter sp. 115 RepID=I4VHU5_9GAMM
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EIL86786.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
SCNpilot_bf_inoc_scaffold_485_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27780..28682)
DNA (903bp) protein (301aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Rhodanobacter denitrificans RepID=M4NIT1_9GAMM
SCNpilot_bf_inoc_scaffold_485_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28855..30051
DNA (1197bp) protein (399aa)
3-oxoacyl-(Acyl carrier protein) synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV7_9GAMM
3-oxoacyl-(acyl-carrier-protein) synthase
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:AGG90817.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_485_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30048..30839
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV8_9GAMM
beta-ketoacyl synthase family protein
Beta-ketoacyl synthase family protein {ECO:0000313|EMBL:AGG90818.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_485_curated_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30863..31627
DNA (765bp) protein (255aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV9_9GAMM
glycosyl transferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 49 in total

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