ggKbase home page

SCNpilot_bf_inoc_scaffold_64_curated

Search features with annotation key words

Displaying items 1-30 of 351 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_64_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(492..1238)
DNA (747bp) protein (249aa)
Phenol hydroxylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ67_9GAMM
flavodoxin reductase family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_64_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1334..2278
DNA (945bp) protein (315aa)
ABC transporter n=1 Tax=Dyella ginsengisoli RepID=UPI00036B02B1
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:AGG87473.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_64_curated_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2275..3054
DNA (780bp) protein (260aa)
Inner membrane transport permease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHB1_9GAMM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
SCNpilot_bf_inoc_scaffold_64_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3163..3882
DNA (720bp) protein (240aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Z3_9GAMM
pseudouridine synthase family protein
SCNpilot_bf_inoc_scaffold_64_curated_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4009..5100)
DNA (1092bp) protein (364aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammapr
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ71_9GAMM
SCNpilot_bf_inoc_scaffold_64_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5168..5383
DNA (216bp) protein (72aa)
30S ribosomal protein S21 n=4 Tax=Rhodanobacter RepID=I4WHW5_9GAMM
SSU ribosomal protein S21P
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_64_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5571..6017
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDG3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87468.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_64_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6027..6323)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHB6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98857.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_64_curated_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6499..6669
DNA (171bp) protein (57aa)
UPF0391 membrane protein UU5_02332 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WLW2_9GAMM
UPF0391 membrane protein UU5_02332 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_64_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6989..8725
DNA (1737bp) protein (579aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W300_9GAMM
SCNpilot_bf_inoc_scaffold_64_curated_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8898..9518
DNA (621bp) protein (207aa)
DedA protein family n=1 Tax=Rhodanobacter sp. 115 RepID=I4W3F1_9GAMM
putative membrane-associated protein
DedA protein family {ECO:0000313|EMBL:EIL93992.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_64_curated_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9546..11195)
DNA (1650bp) protein (550aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F725E9
Na/Pi cotransporter {ECO:0000313|EMBL:AIF46678.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Na+/phosphate symporter
SCNpilot_bf_inoc_scaffold_64_curated_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11372..14008)
DNA (2637bp) protein (879aa)
magnesium-transporting ATPase n=1 Tax=Dyella japonica RepID=UPI0002D5FC6C
Magnesium ABC transporter ATPase {ECO:0000313|EMBL:AIF46677.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
magnesium-translocating P-type ATPase
SCNpilot_bf_inoc_scaffold_64_curated_14
unknown

Not on your lists

comp(14164..14364)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_64_curated_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14660..15565)
DNA (906bp) protein (302aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Protoheme IX farnesyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W3E7_9GAMM
protoheme IX farnesyltransferase
SCNpilot_bf_inoc_scaffold_64_curated_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15562..15987)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W307_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93848.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_64_curated_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16095..17252)
DNA (1158bp) protein (386aa)
Cytochrome oxidase assembly protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHX6_9GAMM
uncharacterized protein required for cytochrome oxidase assembly
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_64_curated_18
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17252..17821)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHX7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX14876.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_64_curated_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17818..18570)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000303DBC7
Uncharacterized protein {ECO:0000313|EMBL:AIF46673.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_64_curated_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18627..18848
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ85_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89376.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Protein of unknown function (DUF2909)
SCNpilot_bf_inoc_scaffold_64_curated_21
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19015..20823)
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003785D91
Uncharacterized protein {ECO:0000313|EMBL:AIF46045.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_64_curated_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20916..21803)
DNA (888bp) protein (296aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 3 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W312_9GAMM
heme/copper-type cytochrome/quinol oxidase, subunit 3
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_64_curated_23
unknown

Not on your lists

comp(21883..22017)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_64_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22033..23646)
DNA (1614bp) protein (538aa)
Cytochrome c oxidase subunit I n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHC9_9GAMM
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EIL98870.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cytochrome c oxidase, subunit I
SCNpilot_bf_inoc_scaffold_64_curated_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23761..24744)
DNA (984bp) protein (328aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Cytochrome c oxidase subunit 2 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ88_9GAMM
cytochrome c oxidase, subunit II
SCNpilot_bf_inoc_scaffold_64_curated_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24765..25253)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003603023
Membrane protein {ECO:0000313|EMBL:AHX14882.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
integral membrane protein
SCNpilot_bf_inoc_scaffold_64_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25446..28634
DNA (3189bp) protein (1063aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12 1.5.99.8)
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:AGG87449.1}; EC=1.5.1.12 {ECO:0000313|EMBL:AGG87449.1};; EC=1.5.99.8 {ECO:0000313|EMBL:AGG87449.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAF6_9GAMM
SCNpilot_bf_inoc_scaffold_64_curated_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28773..30188
DNA (1416bp) protein (472aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHD3_9GAMM
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD-dependent aldehyde dehydrogenase
SCNpilot_bf_inoc_scaffold_64_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30273..31775)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHS7_9GAMM
long-chain fatty acid transport protein
Long-chain fatty acid transport protein {ECO:0000313|EMBL:AGG87447.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_64_curated_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31972..32268
DNA (297bp) protein (99aa)
YcgL domain-containing protein UUC_16390 n=1 Tax=Rhodanobacter denitrificans RepID=I4WHS8_9GAMM
hypothetical protein
YcgL domain-containing protein R2APBS1_0270 {ECO:0000256|HAMAP-Rule:MF_01866}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 351 in total

View Taxonomy